Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/MG/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_MG_cgn_mc float

zemke2023Conserved_Mouse_MG_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_MG_cgn_mc [0, 1]
n
750,924,249
mean
0.734
sd
0.262

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75092424927.50% 14855402
chr1 53291350 27.26% 1055790
chr2 53356750 29.30% 1055771
chr3 42921450 26.82% 850456
chr4 45435600 29.03% 899903
chr5 46334000 30.52% 917556
chr6 41737450 27.87% 826716
chr7 41260400 28.37% 816527
chr8 39289900 30.36% 777951
chr9 37841050 30.37% 749397
chr10 38857350 29.73% 768748
chr11 39819500 32.62% 786981
chr12 33693350 28.05% 667343
chr13 34808100 28.91% 688109
chr14 32870900 26.32% 651008
chr15 30627100 29.44% 606614
chr16 27171850 27.67% 537944
chr17 29217800 30.76% 577368
chr18 25870300 28.52% 512503
chr19 19310200 31.43% 381853
chrM 6699 41.10% 133
chrX 32681200 19.11% 638674
chrY 4521950 4.93% 88057
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14855402 49 800 50.55 50
global segment-length histogram

Files

Filename Size md5
MG.CGN-both.bedgraph.gz 115.18 MB 3100d5aa859fb2a06c1f93908545656b
MG.CGN-both.bedgraph.gz.tbi 640.45 KB 1ac1020dddb7ecb1aa665f656a22b7a0
genomic_resource.yaml 1.06 KB 8b3417da305f9e3a8492985a26048e6a
statistics/