Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/MG/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for MG cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: MG
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_MG_chn_mc float

zemke2023Conserved_Mouse_MG_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_MG_chn_mc [0, 1]
n
2,484,593,399
mean
0.00882
sd
0.0124

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248459339990.98% 47302435
chr1 186796400 95.56% 3591831
chr2 172357550 94.64% 3327789
chr3 151790600 94.85% 2908692
chr4 145734400 93.12% 2804800
chr5 142227500 93.67% 2739654
chr6 142115450 94.91% 2734542
chr7 132977200 91.43% 2549488
chr8 122047000 94.32% 2353160
chr9 118541700 95.14% 2297349
chr10 123565300 94.54% 2377165
chr11 116613450 95.52% 2269824
chr12 112716600 93.83% 2160333
chr13 113400350 94.17% 2179880
chr14 113977700 91.25% 2175544
chr15 98285850 94.47% 1893752
chr16 92398300 94.08% 1774470
chr17 89104750 93.81% 1716194
chr18 85387950 94.14% 1647684
chr19 57004200 92.79% 1103736
chrM 12649 77.61% 252
chrX 146381700 85.59% 2424125
chrY 21156800 23.06% 272171
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47302435 49 1300 52.53 50
global segment-length histogram

Files

Filename Size md5
MG.CHN-both.bedgraph.gz 377.98 MB 139a5df94e0bbfe868f4f43005a9c486
MG.CHN-both.bedgraph.gz.tbi 546.5 KB 169df17f266bd692c47100bde3cd6744
genomic_resource.yaml 1.06 KB 03379e74e70b515682909a7375315618
statistics/