Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/NP/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_NP_cgn_mc float

zemke2023Conserved_Mouse_NP_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_NP_cgn_mc [0, 1]
n
728,125,899
mean
0.863
sd
0.262

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72812589926.66% 11723323
chr1 51998800 26.60% 844046
chr2 52210950 28.67% 842089
chr3 41792950 26.11% 675297
chr4 44331100 28.33% 713787
chr5 45296400 29.83% 722553
chr6 40726500 27.20% 660017
chr7 40080250 27.56% 652071
chr8 38433300 29.70% 611140
chr9 37078250 29.76% 593648
chr10 37964200 29.05% 606967
chr11 39133750 32.06% 624163
chr12 32754800 27.27% 530543
chr13 33908300 28.16% 545081
chr14 31885150 25.53% 515883
chr15 29932550 28.77% 479943
chr16 26511900 27.00% 427833
chr17 28514200 30.02% 453796
chr18 25288650 27.88% 405752
chr19 18938150 30.83% 300930
chrM 6699 41.10% 132
chrX 28419300 16.62% 466186
chrY 2919750 3.18% 51466
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 11723323 49 1600 62.11 50
global segment-length histogram

Files

Filename Size md5
NP.CGN-both.bedgraph.gz 69.59 MB 2568bc56b43d8ba1fa294319de4b28bd
NP.CGN-both.bedgraph.gz.tbi 628.99 KB 9656acf0664e1507a2c5f70933b1b6d8
genomic_resource.yaml 1.06 KB 8db059a6f4b548514fafb97589b3360d
statistics/