Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/NP/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for NP cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: NP
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_NP_chn_mc float

zemke2023Conserved_Mouse_NP_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_NP_chn_mc [0, 1]
n
2,435,443,949
mean
0.0304
sd
0.0451

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 243544394989.18% 38478906
chr1 184472450 94.37% 2992899
chr2 170323550 93.53% 2767942
chr3 149687250 93.53% 2390660
chr4 143500500 91.69% 2296521
chr5 140266300 92.38% 2269264
chr6 140267950 93.68% 2251085
chr7 130123850 89.47% 1997032
chr8 120474300 93.10% 1965416
chr9 117278750 94.13% 1912845
chr10 121995000 93.34% 1960907
chr11 115575900 94.67% 1915988
chr12 110848250 92.27% 1760466
chr13 111679550 92.74% 1780529
chr14 111729000 89.45% 1795716
chr15 97081500 93.31% 1573306
chr16 91243650 92.91% 1470835
chr17 87856350 92.49% 1382506
chr18 84415300 93.07% 1377420
chr19 56406050 91.82% 913160
chrM 12549 76.99% 250
chrX 136115050 79.58% 1594097
chrY 14090900 15.36% 110062
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38478906 49 3050 63.29 50
global segment-length histogram

Files

Filename Size md5
NP.CHN-both.bedgraph.gz 268.22 MB 59d2415e7df23e156e131d4fb971514f
NP.CHN-both.bedgraph.gz.tbi 529.45 KB 9b43e95c501226ee23431d375e2ebbb8
genomic_resource.yaml 1.06 KB 25017cac8c4598dfb4631b6989e8eb17
statistics/