Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/ODC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_ODC_cgn_mc float

zemke2023Conserved_Mouse_ODC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_ODC_cgn_mc [0, 1]
n
752,439,699
mean
0.773
sd
0.256

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75243969927.55% 14955887
chr1 53368900 27.30% 1061676
chr2 53422250 29.33% 1062344
chr3 42988250 26.86% 854811
chr4 45514800 29.08% 905259
chr5 46398600 30.56% 922798
chr6 41800550 27.92% 831301
chr7 41372550 28.45% 822884
chr8 39348350 30.41% 782767
chr9 37877000 30.40% 753458
chr10 38905850 29.77% 773748
chr11 39847850 32.64% 792420
chr12 33749250 28.09% 671014
chr13 34861200 28.95% 693132
chr14 32947700 26.38% 654918
chr15 30664050 29.47% 610014
chr16 27208400 27.70% 540935
chr17 29259800 30.80% 581414
chr18 25898050 28.55% 514892
chr19 19326100 31.46% 384356
chrM 6699 41.10% 133
chrX 32884050 19.23% 647643
chrY 4789450 5.22% 93970
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14955887 49 650 50.31 50
global segment-length histogram

Files

Filename Size md5
ODC.CGN-both.bedgraph.gz 120.11 MB 1dad238fb68fade5a5584ceb177722b5
ODC.CGN-both.bedgraph.gz.tbi 642.72 KB 52d48c5015eb6a125ac45741fd2c7b65
genomic_resource.yaml 1.06 KB 4098aeb60ed9a81af494907d54285342
statistics/