Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/ODC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for ODC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: ODC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_ODC_chn_mc float

zemke2023Conserved_Mouse_ODC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_ODC_chn_mc [0, 1]
n
2,490,250,849
mean
0.0142
sd
0.0167

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 249025084991.19% 48896154
chr1 187021450 95.68% 3696175
chr2 172588250 94.77% 3415275
chr3 151988150 94.97% 2999879
chr4 146016550 93.30% 2880489
chr5 142465850 93.83% 2813328
chr6 142312600 95.04% 2811945
chr7 133470150 91.77% 2617564
chr8 122224800 94.45% 2415511
chr9 118655300 95.23% 2350834
chr10 123718450 94.66% 2445747
chr11 116707050 95.60% 2316593
chr12 112902900 93.98% 2224132
chr13 113565700 94.31% 2240682
chr14 114285700 91.50% 2246536
chr15 98381000 94.56% 1945553
chr16 92504800 94.19% 1828564
chr17 89231300 93.94% 1762030
chr18 85468750 94.23% 1692361
chr19 57057400 92.88% 1130775
chrM 12699 77.91% 253
chrX 147103250 86.01% 2738016
chrY 22568750 24.60% 323912
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48896154 49 1100 50.93 50
global segment-length histogram

Files

Filename Size md5
ODC.CHN-both.bedgraph.gz 404.6 MB 59ff99a9ae96c150b34c6ab9c325b525
ODC.CHN-both.bedgraph.gz.tbi 548.56 KB 17ceacffe8ce00a1340e4f158638a8ef
genomic_resource.yaml 1.06 KB 31d0818b40f0bf1e9caf517704fd16fc
statistics/