Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/OPC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for OPC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: OPC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_OPC_cgn_mc float

zemke2023Conserved_Mouse_OPC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_OPC_cgn_mc [0, 1]
n
746,416,499
mean
0.739
sd
0.282

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74641649927.33% 14291172
chr1 53063600 27.15% 1020538
chr2 53162550 29.19% 1018738
chr3 42713100 26.69% 820117
chr4 45217300 28.89% 867526
chr5 46146650 30.39% 883609
chr6 41547700 27.75% 797086
chr7 40987200 28.18% 787633
chr8 39146350 30.25% 750577
chr9 37715700 30.27% 722822
chr10 38710250 29.62% 741249
chr11 39718350 32.53% 758693
chr12 33500450 27.89% 642098
chr13 34639650 28.77% 663147
chr14 32658350 26.15% 626549
chr15 30512900 29.33% 584926
chr16 27058400 27.55% 518672
chr17 29085600 30.62% 556041
chr18 25771850 28.41% 493638
chr19 19258450 31.35% 368099
chrM 6699 41.10% 133
chrX 31908500 18.66% 595211
chrY 3886900 4.24% 74070
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14291172 49 1200 52.23 50
global segment-length histogram

Files

Filename Size md5
OPC.CGN-both.bedgraph.gz 99.38 MB e136d65efa3c9edad30e9315f14ddd2d
OPC.CGN-both.bedgraph.gz.tbi 631.47 KB 44d3b3f3bcb088a1983482e2b0de039b
genomic_resource.yaml 1.06 KB ae51cffdc1ab56bdf2de87ef9fafa067
statistics/