Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/OPC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for OPC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: OPC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_OPC_chn_mc float

zemke2023Conserved_Mouse_OPC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_OPC_chn_mc [0, 1]
n
2,470,352,549
mean
0.00902
sd
0.0168

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 247035254990.46% 39269106
chr1 186180050 95.25% 2995984
chr2 171798000 94.34% 2809873
chr3 151199950 94.48% 2406306
chr4 145042750 92.67% 2365610
chr5 141643600 93.29% 2310237
chr6 141609250 94.57% 2291513
chr7 131971200 90.74% 2159105
chr8 121598950 93.97% 1984615
chr9 118196350 94.86% 1957004
chr10 123141800 94.22% 1983686
chr11 116329800 95.29% 1950679
chr12 112175250 93.38% 1806792
chr13 112932100 93.78% 1825189
chr14 113265500 90.68% 1806205
chr15 97969550 94.16% 1587899
chr16 92094650 93.78% 1475831
chr17 88752350 93.44% 1444904
chr18 85123700 93.85% 1382504
chr19 56848150 92.54% 940957
chrM 12499 76.69% 250
chrX 144319050 84.38% 1609177
chrY 18148050 19.78% 174786
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39269106 49 2050 62.91 50
global segment-length histogram

Files

Filename Size md5
OPC.CHN-both.bedgraph.gz 285.0 MB c7884674344e70be2b51703e85b192d4
OPC.CHN-both.bedgraph.gz.tbi 531.79 KB 796ae2712a89d7d1509ed5e442a7ac91
genomic_resource.yaml 1.06 KB 103b42de2ee1f8e236218e6865108c38
statistics/