Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Pvalb-BC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Pvalb-BC_cgn_mc float

zemke2023Conserved_Mouse_Pvalb-BC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Pvalb-BC_cgn_mc [0, 1]
n
746,373,399
mean
0.847
sd
0.255

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74637339927.33% 13478048
chr1 53056850 27.14% 959275
chr2 53159850 29.19% 961070
chr3 42716800 26.69% 771357
chr4 45213200 28.89% 817863
chr5 46140200 30.39% 835048
chr6 41546700 27.75% 752598
chr7 40977950 28.17% 747582
chr8 39136000 30.24% 705006
chr9 37719950 30.27% 681120
chr10 38706200 29.62% 698336
chr11 39720100 32.54% 716187
chr12 33502500 27.89% 606683
chr13 34643450 28.77% 625103
chr14 32659900 26.15% 589812
chr15 30514300 29.33% 551799
chr16 27058800 27.55% 490094
chr17 29086850 30.62% 526267
chr18 25772300 28.41% 464560
chr19 19257900 31.35% 346802
chrM 6749 41.41% 134
chrX 31901950 18.65% 559581
chrY 3874900 4.22% 71771
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13478048 49 1200 55.38 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CGN-both.bedgraph.gz 89.24 MB e4407541c2b0f475885b0665e9a07c47
Pvalb-BC.CGN-both.bedgraph.gz.tbi 626.96 KB 826178d79315924c4cfb0fdb3257c11b
genomic_resource.yaml 1.09 KB c438f2b2a40cdd164e96415bdd3f26ee
statistics/