Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Pvalb-BC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Pvalb-BC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Pvalb-BC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Pvalb-BC_chn_mc float

zemke2023Conserved_Mouse_Pvalb-BC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Pvalb-BC_chn_mc [0, 1]
n
2,470,917,899
mean
0.0357
sd
0.0389

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 247091789990.48% 46821148
chr1 186220800 95.27% 3583547
chr2 171819700 94.35% 3305183
chr3 151248200 94.51% 2905284
chr4 145061300 92.69% 2775042
chr5 141670900 93.31% 2717490
chr6 141635000 94.59% 2712260
chr7 131984600 90.75% 2451569
chr8 121630500 93.99% 2339622
chr9 118232150 94.89% 2273875
chr10 123165750 94.24% 2366096
chr11 116369450 95.32% 2252783
chr12 112200750 93.40% 2128833
chr13 112956150 93.80% 2151028
chr14 113298250 90.71% 2173246
chr15 98002050 94.19% 1890090
chr16 92116600 93.80% 1766488
chr17 88772400 93.46% 1676690
chr18 85147200 93.88% 1642723
chr19 56867200 92.57% 1090575
chrM 12599 77.30% 252
chrX 144350150 84.40% 2433572
chrY 18156200 19.79% 184900
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46821148 49 1700 52.77 50
global segment-length histogram

Files

Filename Size md5
Pvalb-BC.CHN-both.bedgraph.gz 363.03 MB 0ca3bd5a981cb7723b78f36363138659
Pvalb-BC.CHN-both.bedgraph.gz.tbi 544.78 KB 6b05c0ca10c30ff29dfe779f0cd06797
genomic_resource.yaml 1.09 KB 7bef1f442b119cc860e58787c4ce0bd7
statistics/