Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Pvalb-ChC/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Pvalb-ChC_cgn_mc float

zemke2023Conserved_Mouse_Pvalb-ChC_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Pvalb-ChC_cgn_mc [0, 1]
n
222,590,149
mean
0.839
sd
0.352

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2225901498.15% 3422658
chr1 16027350 8.20% 249735
chr2 16405350 9.01% 251307
chr3 12723350 7.95% 198407
chr4 13938100 8.91% 212424
chr5 14173000 9.33% 214713
chr6 12549550 8.38% 195415
chr7 12545400 8.63% 193224
chr8 12136800 9.38% 183661
chr9 11697400 9.39% 178377
chr10 11742800 8.98% 179368
chr11 12566950 10.29% 188332
chr12 10126200 8.43% 156536
chr13 10450900 8.68% 161115
chr14 9710550 7.77% 151483
chr15 9341400 8.98% 142571
chr16 8103400 8.25% 126178
chr17 8973350 9.45% 135610
chr18 7883600 8.69% 121938
chr19 5979350 9.73% 89907
chrM 6349 38.95% 62
chrX 5052550 2.95% 84357
chrY 456450 0.50% 7938
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 3422658 49 1050 65.03 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CGN-both.bedgraph.gz 18.8 MB f838b54c15affd4b84282f479bdbe648
Pvalb-ChC.CGN-both.bedgraph.gz.tbi 1006.35 KB 06537de4c10da33260c9788842c854b1
genomic_resource.yaml 1.1 KB 0760a0ac1126ecd1f3990ab14972ee5d
statistics/