Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Pvalb-ChC/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Pvalb-ChC cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Pvalb-ChC
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Pvalb-ChC_chn_mc float

zemke2023Conserved_Mouse_Pvalb-ChC_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Pvalb-ChC_chn_mc [0, 1]
n
909,714,149
mean
0.0353
sd
0.0908

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90971414933.31% 10063019
chr1 70295600 35.96% 786896
chr2 65876050 36.17% 738399
chr3 56397050 35.24% 627068
chr4 55392250 35.39% 616253
chr5 53837450 35.46% 593370
chr6 53700150 35.86% 591490
chr7 50134800 34.47% 531564
chr8 46617550 36.03% 520608
chr9 45827500 36.78% 515049
chr10 46514350 35.59% 510599
chr11 45762600 37.48% 518485
chr12 42077900 35.03% 465363
chr13 42648850 35.42% 469176
chr14 42030000 33.65% 470606
chr15 37297600 35.85% 417961
chr16 34482400 35.11% 383147
chr17 33958100 35.75% 362998
chr18 32556300 35.89% 366031
chr19 21991750 35.80% 245798
chrM 11949 73.31% 72
chrX 29817950 17.43% 310792
chrY 2486000 2.71% 21294
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 10063019 50 1600 90.4 50
global segment-length histogram

Files

Filename Size md5
Pvalb-ChC.CHN-both.bedgraph.gz 59.34 MB 944b90c37867b665fc546dcd59ca8d36
Pvalb-ChC.CHN-both.bedgraph.gz.tbi 522.66 KB bfa7774447f2bb980559472655988652
genomic_resource.yaml 1.1 KB 6598f995f9c94b8edb94c3981839bd0e
statistics/