Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Sncg/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Sncg cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Sncg
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Sncg_cgn_mc float

zemke2023Conserved_Mouse_Sncg_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Sncg_cgn_mc [0, 1]
n
641,373,599
mean
0.849
sd
0.305

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 64137359923.49% 9662455
chr1 45970050 23.52% 700578
chr2 46538000 25.55% 698364
chr3 36824800 23.01% 561044
chr4 39457500 25.21% 590440
chr5 40360550 26.58% 598660
chr6 36086650 24.10% 548237
chr7 35713900 24.56% 540720
chr8 34266700 26.48% 507348
chr9 33132950 26.59% 494679
chr10 33689850 25.78% 502727
chr11 35251350 28.88% 518910
chr12 28941300 24.09% 440621
chr13 30000750 24.91% 451783
chr14 28063750 22.47% 427721
chr15 26687450 25.65% 398988
chr16 23408250 23.84% 355605
chr17 25379350 26.72% 375652
chr18 22440650 24.74% 338328
chr19 16955750 27.60% 248768
chrM 6699 41.10% 118
chrX 20302600 11.87% 330014
chrY 1894750 2.07% 33150
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 9662455 49 1900 66.38 50
global segment-length histogram

Files

Filename Size md5
Sncg.CGN-both.bedgraph.gz 54.24 MB 8a3644866aab132947facbdda88380fa
Sncg.CGN-both.bedgraph.gz.tbi 668.36 KB f951fef67de23b03fe0a5ed456c64dbd
genomic_resource.yaml 1.07 KB 82c5549d9bcfca9b61750cde5cee4ed1
statistics/