Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Sncg/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Sncg cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Sncg
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Sncg_chn_mc float

zemke2023Conserved_Mouse_Sncg_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Sncg_chn_mc [0, 1]
n
2,258,428,499
mean
0.0365
sd
0.0678

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 225842849982.70% 29642907
chr1 172646650 88.32% 2314356
chr2 160082400 87.90% 2153057
chr3 139640900 87.25% 1855246
chr4 134523400 85.95% 1789558
chr5 131481500 86.60% 1748831
chr6 131417300 87.77% 1744772
chr7 121875450 83.80% 1521962
chr8 113109650 87.41% 1527475
chr9 110535300 88.72% 1484330
chr10 114225000 87.40% 1521973
chr11 109509900 89.70% 1493533
chr12 103370400 86.05% 1340102
chr13 104430900 86.72% 1350483
chr14 103940950 83.22% 1396255
chr15 91112300 87.57% 1230533
chr16 85275750 86.83% 1130777
chr17 82371600 86.72% 1044190
chr18 79192450 87.31% 1065291
chr19 53181850 86.57% 710017
chrM 12499 76.69% 245
chrX 106867400 62.48% 1147100
chrY 9624950 10.49% 72821
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29642907 49 3050 76.19 50
global segment-length histogram

Files

Filename Size md5
Sncg.CHN-both.bedgraph.gz 192.6 MB fa52434bb16af13e39720093d49c08e3
Sncg.CHN-both.bedgraph.gz.tbi 513.12 KB 7a7d4adeb4675818de30441fc00084d8
genomic_resource.yaml 1.07 KB 8e5bc947ee50f19449ee162b7ba4f0c2
statistics/