Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Sst/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Sst cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Sst
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Sst_cgn_mc float

zemke2023Conserved_Mouse_Sst_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Sst_cgn_mc [0, 1]
n
744,925,999
mean
0.857
sd
0.246

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74492599927.28% 13177428
chr1 52981300 27.10% 939240
chr2 53097200 29.16% 940490
chr3 42647450 26.65% 754736
chr4 45158400 28.85% 800416
chr5 46091050 30.36% 815977
chr6 41491950 27.71% 735578
chr7 40904650 28.12% 731145
chr8 39090150 30.21% 689333
chr9 37676450 30.24% 666481
chr10 38658400 29.58% 682751
chr11 39687500 32.51% 700723
chr12 33437300 27.83% 594738
chr13 34591050 28.72% 610736
chr14 32595550 26.10% 576491
chr15 30477450 29.29% 539231
chr16 27023150 27.52% 479536
chr17 29038800 30.57% 513512
chr18 25738600 28.38% 454559
chr19 19236700 31.31% 338821
chrM 6699 41.10% 132
chrX 31559450 18.45% 544300
chrY 3736750 4.07% 68502
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 13177428 49 1650 56.53 50
global segment-length histogram

Files

Filename Size md5
Sst.CGN-both.bedgraph.gz 85.25 MB ece2a276c3d08b464d92342bbd8884d9
Sst.CGN-both.bedgraph.gz.tbi 626.49 KB 8154f964c504de165c4de848a48bb630
genomic_resource.yaml 1.06 KB 2e39137d3ce32a5568aed4f185e9848a
statistics/