Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Sst/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Sst cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Sst
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Sst_chn_mc float

zemke2023Conserved_Mouse_Sst_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Sst_chn_mc [0, 1]
n
2,467,227,999
mean
0.037
sd
0.0406

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 246722799990.35% 46160747
chr1 186048150 95.18% 3545284
chr2 171680300 94.27% 3270673
chr3 151089850 94.41% 2866399
chr4 144899600 92.58% 2738137
chr5 141546850 93.22% 2684838
chr6 141494300 94.50% 2678963
chr7 131750950 90.59% 2412168
chr8 121514650 93.91% 2314761
chr9 118135950 94.82% 2249517
chr10 123055450 94.15% 2336885
chr11 116295400 95.26% 2230234
chr12 112054000 93.28% 2096211
chr13 112826800 93.69% 2125480
chr14 113111000 90.56% 2143142
chr15 97912650 94.11% 1869327
chr16 92026900 93.71% 1742258
chr17 88678250 93.36% 1652895
chr18 85073750 93.79% 1625020
chr19 56819650 92.49% 1079009
chrM 12499 76.69% 250
chrX 143632400 83.98% 2329574
chrY 17568650 19.15% 169722
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46160747 49 1800 53.45 50
global segment-length histogram

Files

Filename Size md5
Sst.CHN-both.bedgraph.gz 352.47 MB 2a261f9acdd89273839a42e26a9b7aca
Sst.CHN-both.bedgraph.gz.tbi 543.14 KB 2ca837cdf4d703110578feeda4db67b0
genomic_resource.yaml 1.06 KB 58e9ad2c7e9cc09dfb952acc238424d1
statistics/