Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Vip/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Vip cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Vip
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Vip_cgn_mc float

zemke2023Conserved_Mouse_Vip_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Vip_cgn_mc [0, 1]
n
737,412,949
mean
0.837
sd
0.264

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 73741294927.00% 12655413
chr1 52561200 26.89% 906216
chr2 52727700 28.95% 906174
chr3 42283550 26.42% 726754
chr4 44801250 28.63% 770345
chr5 45745400 30.13% 783793
chr6 41157400 27.49% 709659
chr7 40534300 27.87% 702942
chr8 38813850 29.99% 661629
chr9 37432150 30.04% 642444
chr10 38373350 29.36% 654928
chr11 39474750 32.33% 675498
chr12 33134550 27.58% 571326
chr13 34285600 28.47% 586718
chr14 32277950 25.84% 554988
chr15 30255800 29.08% 518615
chr16 26806850 27.30% 461370
chr17 28814650 30.34% 492303
chr18 25559300 28.18% 437890
chr19 19118400 31.12% 325716
chrM 6699 41.10% 133
chrX 29992850 17.54% 507675
chrY 3255400 3.55% 58297
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 12655413 49 1850 58.27 50
global segment-length histogram

Files

Filename Size md5
Vip.CGN-both.bedgraph.gz 78.43 MB 694064e642c8523084c3e29953517fd2
Vip.CGN-both.bedgraph.gz.tbi 628.23 KB 53d3e98f6a7d06d4fab77cb47adfc7a6
genomic_resource.yaml 1.06 KB 12d0cc6c57ea8ac5a9cbde770cdf408a
statistics/