Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Vip/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Vip cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Vip
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Vip_chn_mc float

zemke2023Conserved_Mouse_Vip_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Vip_chn_mc [0, 1]
n
2,451,979,949
mean
0.0294
sd
0.0397

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 245197994989.79% 41385109
chr1 185317250 94.81% 3199815
chr2 171048400 93.92% 2957842
chr3 150452700 94.01% 2584527
chr4 144231400 92.16% 2481431
chr5 140927700 92.82% 2428686
chr6 140924050 94.11% 2412858
chr7 130925300 90.02% 2150063
chr8 121043400 93.54% 2110951
chr9 117750400 94.51% 2038901
chr10 122570500 93.78% 2114444
chr11 115978300 95.00% 2034812
chr12 111458350 92.78% 1893467
chr13 112284350 93.24% 1900126
chr14 112430550 90.01% 1933439
chr15 97560350 93.77% 1697396
chr16 91664150 93.34% 1576445
chr17 88285850 92.94% 1476736
chr18 84774450 93.46% 1478687
chr19 56638300 92.20% 976546
chrM 12549 76.99% 251
chrX 140193600 81.97% 1808612
chrY 15508050 16.90% 129074
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41385109 49 2400 59.25 50
global segment-length histogram

Files

Filename Size md5
Vip.CHN-both.bedgraph.gz 296.43 MB 45e07ea1e7cd2406f6ba42fb28ad32eb
Vip.CHN-both.bedgraph.gz.tbi 534.65 KB 7bdbb5d1226a0b4b409bc094a1fa9fbd
genomic_resource.yaml 1.06 KB b2aff1fb9940e3acb89ff5329836b1f7
statistics/