Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Vsc/CGNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Vsc cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Vsc
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CGN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Vsc_cgn_mc float

zemke2023Conserved_Mouse_Vsc_cgn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Vsc_cgn_mc [0, 1]
n
748,544,699
mean
0.736
sd
0.259

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74854469927.41% 14632194
chr1 53173150 27.20% 1042212
chr2 53248850 29.24% 1042211
chr3 42810050 26.75% 838096
chr4 45319650 28.96% 887159
chr5 46238100 30.45% 904983
chr6 41637950 27.81% 816055
chr7 41103750 28.26% 804591
chr8 39212600 30.30% 768015
chr9 37777400 30.32% 738558
chr10 38779600 29.67% 757825
chr11 39763100 32.57% 776375
chr12 33594350 27.97% 658024
chr13 34723150 28.83% 678515
chr14 32755300 26.22% 641282
chr15 30565900 29.38% 598680
chr16 27115250 27.61% 530529
chr17 29152600 30.69% 569221
chr18 25818950 28.47% 505016
chr19 19285100 31.39% 376599
chrM 6699 41.10% 133
chrX 32307250 18.89% 618083
chrY 4155950 4.53% 80032
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 14632194 49 800 51.16 50
global segment-length histogram

Files

Filename Size md5
Vsc.CGN-both.bedgraph.gz 106.68 MB 8d6fb7a2ddda79d9a8c5efe73f7e1690
Vsc.CGN-both.bedgraph.gz.tbi 634.42 KB 3e970b7dc5da0a0bc2a5b6cdcd091a33
genomic_resource.yaml 1.06 KB 26f201f316e988fc0206a27f7745f187
statistics/