Resource

Id summary/zemke2023Conserved/pseudobulk_methylation/Mouse/Vsc/CHNcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk wc track in Mouse M1 region for Vsc cell type
Description
Labels
  • assay: snm3C-seq
  • brain_region: mop
  • cell_type: Vsc
  • data_types: methylation_signal
  • dataset: zemke2023Conserved
  • measure: CHN
  • modalities: DNA_methylation
  • processing_level: processed
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • species: mouse
  • vendor: UCSD Single-cell Epigenomics Platform

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_Mouse_Vsc_chn_mc float

zemke2023Conserved_Mouse_Vsc_chn_mc
HISTOGRAM FOR zemke2023Conserved_Mouse_Vsc_chn_mc [0, 1]
n
2,476,495,199
mean
0.0106
sd
0.0157

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 247649519990.69% 44275492
chr1 186474000 95.40% 3375650
chr2 172041550 94.47% 3146818
chr3 151472750 94.65% 2721936
chr4 145332600 92.86% 2646052
chr5 141904250 93.46% 2585860
chr6 141829950 94.72% 2570963
chr7 132362250 91.01% 2402665
chr8 121797800 94.12% 2220787
chr9 118356950 94.99% 2183150
chr10 123325450 94.36% 2232764
chr11 116460250 95.39% 2169449
chr12 112422550 93.58% 2027527
chr13 113139700 93.95% 2052453
chr14 113567900 90.93% 2034368
chr15 98111850 94.30% 1784226
chr16 92231400 93.91% 1667320
chr17 88908850 93.60% 1620647
chr18 85234850 93.97% 1556140
chr19 56919150 92.65% 1047354
chrM 12599 77.30% 252
chrX 145241850 84.92% 2017541
chrY 19346700 21.09% 211570
44 contigs with no values (5334105 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44275492 49 1500 55.93 50
global segment-length histogram

Files

Filename Size md5
Vsc.CHN-both.bedgraph.gz 337.14 MB 51d861dd5740860a68dada0d757cf105
Vsc.CHN-both.bedgraph.gz.tbi 540.33 KB 271da24d63e75d977da4a0871dd72dc2
genomic_resource.yaml 1.06 KB 8a021bf6fe5c5ced3fa224386def9f8e
statistics/