Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/ASCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for ASC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: ASC
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_ASC_rna_rpkm float

zemke2023Conserved_mouse_mop_ASC_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for ASC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_ASC_rna_rpkm [0, 2.59e+05]
n
2,730,871,774
mean
1.06
sd
66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 9559995
chr1 195471971 100.00% 679934
chr2 182113224 100.00% 792094
chr3 160039680 100.00% 516127
chr4 156508116 100.00% 553264
chr5 151834684 100.00% 572746
chr6 149736546 100.00% 539759
chr7 145441459 100.00% 476501
chr8 129401213 100.00% 434127
chr9 124595110 100.00% 543863
chr10 130694993 100.00% 464192
chr11 122082543 100.00% 517612
chr12 120129022 100.00% 446647
chr13 120421639 100.00% 411266
chr14 124902244 100.00% 454900
chr15 104043685 100.00% 357567
chr16 98207768 100.00% 410843
chr17 94987271 100.00% 365945
chr18 90702639 100.00% 340927
chr19 61431566 100.00% 262659
chrM 16299 100.00% 322
chrX 171031299 100.00% 397658
chrY 91744698 100.00% 13504
GL456210.1 169725 100.00% 56
GL456211.1 241735 100.00% 90
GL456212.1 153618 100.00% 68
GL456213.1 39340 100.00% 31
GL456216.1 66673 100.00% 586
GL456219.1 175968 100.00% 35
GL456221.1 206961 100.00% 67
GL456233.1 336933 100.00% 2442
GL456239.1 40056 100.00% 17
GL456350.1 227966 100.00% 780
GL456354.1 195993 100.00% 37
GL456359.1 22974 100.00% 14
GL456360.1 31704 100.00% 149
GL456366.1 47073 100.00% 160
GL456367.1 42057 100.00% 29
GL456368.1 20208 100.00% 40
GL456370.1 26764 100.00% 259
GL456372.1 28664 100.00% 1
GL456378.1 31602 100.00% 26
GL456379.1 72385 100.00% 61
GL456381.1 25871 100.00% 1
GL456382.1 23158 100.00% 23
GL456383.1 38659 100.00% 5
GL456385.1 35240 100.00% 1
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 17
GL456390.1 24668 100.00% 5
GL456392.1 23629 100.00% 17
GL456393.1 55711 100.00% 1
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 24
JH584292.1 14945 100.00% 1
JH584293.1 207968 100.00% 300
JH584294.1 191905 100.00% 1299
JH584295.1 1976 100.00% 5
JH584296.1 199368 100.00% 15
JH584297.1 205776 100.00% 14
JH584298.1 184189 100.00% 13
JH584299.1 953012 100.00% 124
JH584300.1 182347 100.00% 5
JH584301.1 259875 100.00% 7
JH584302.1 155838 100.00% 1
JH584303.1 158099 100.00% 1
JH584304.1 114452 100.00% 709

Segment lengths

segments min max mean median
segments 9559995 50 3227050 285.66 50
global segment-length histogram

Files

Filename Size md5
ASC_RNA_RPKM.bw 51.49 MB 874d684ee0912650564ee6c37573843b
genomic_resource.yaml 1.19 KB e15eb423acfff902fc05b7878687743a
statistics/