Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/L5_ETcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for L5_ET cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L5_ET
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L5_ET_rna_rpkm float

zemke2023Conserved_mouse_mop_L5_ET_rna_rpkm

Pseudo-bulk RPKM rna in mouse_mop for L5_ET cell type
HISTOGRAM FOR zemke2023Conserved_mouse_mop_L5_ET_rna_rpkm [0, 1.78e+05]
n
2,730,871,774
mean
1.06
sd
45.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 16915823
chr1 195471971 100.00% 1214625
chr2 182113224 100.00% 1354204
chr3 160039680 100.00% 917101
chr4 156508116 100.00% 1017940
chr5 151834684 100.00% 1038509
chr6 149736546 100.00% 1016010
chr7 145441459 100.00% 874464
chr8 129401213 100.00% 841178
chr9 124595110 100.00% 905533
chr10 130694993 100.00% 864584
chr11 122082543 100.00% 878950
chr12 120129022 100.00% 772763
chr13 120421639 100.00% 728406
chr14 124902244 100.00% 765203
chr15 104043685 100.00% 692962
chr16 98207768 100.00% 657758
chr17 94987271 100.00% 626963
chr18 90702639 100.00% 572021
chr19 61431566 100.00% 385473
chrM 16299 100.00% 322
chrX 171031299 100.00% 749146
chrY 91744698 100.00% 28517
GL456210.1 169725 100.00% 134
GL456211.1 241735 100.00% 220
GL456212.1 153618 100.00% 183
GL456213.1 39340 100.00% 145
GL456216.1 66673 100.00% 697
GL456219.1 175968 100.00% 109
GL456221.1 206961 100.00% 183
GL456233.1 336933 100.00% 3246
GL456239.1 40056 100.00% 41
GL456350.1 227966 100.00% 2106
GL456354.1 195993 100.00% 80
GL456359.1 22974 100.00% 25
GL456360.1 31704 100.00% 109
GL456366.1 47073 100.00% 80
GL456367.1 42057 100.00% 53
GL456368.1 20208 100.00% 61
GL456370.1 26764 100.00% 369
GL456372.1 28664 100.00% 5
GL456378.1 31602 100.00% 44
GL456379.1 72385 100.00% 97
GL456381.1 25871 100.00% 7
GL456382.1 23158 100.00% 42
GL456383.1 38659 100.00% 11
GL456385.1 35240 100.00% 5
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 13
GL456390.1 24668 100.00% 11
GL456392.1 23629 100.00% 17
GL456393.1 55711 100.00% 38
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 32
JH584292.1 14945 100.00% 32
JH584293.1 207968 100.00% 1132
JH584294.1 191905 100.00% 2377
JH584295.1 1976 100.00% 25
JH584296.1 199368 100.00% 79
JH584297.1 205776 100.00% 66
JH584298.1 184189 100.00% 43
JH584299.1 953012 100.00% 401
JH584300.1 182347 100.00% 14
JH584301.1 259875 100.00% 37
JH584302.1 155838 100.00% 8
JH584303.1 158099 100.00% 15
JH584304.1 114452 100.00% 797

Segment lengths

segments min max mean median
segments 16915823 50 3101050 161.44 50
global segment-length histogram

Files

Filename Size md5
L5_ET_RNA_RPKM.bw 95.55 MB 9936c72fd7a604e23df2476293c9440b
genomic_resource.yaml 1.21 KB 0c3c9b75c05465f8a193d04978a19e67
statistics/