Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/L5_ITcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for L5_IT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L5_IT
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L5_IT_rna_rpkm float

zemke2023Conserved_mouse_mop_L5_IT_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for L5_IT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L5_IT_rna_rpkm [0, 1.8e+05]
n
2,730,871,774
mean
1.07
sd
44.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 18649910
chr1 195471971 100.00% 1350876
chr2 182113224 100.00% 1474818
chr3 160039680 100.00% 1011019
chr4 156508116 100.00% 1118686
chr5 151834684 100.00% 1140684
chr6 149736546 100.00% 1107230
chr7 145441459 100.00% 959332
chr8 129401213 100.00% 921048
chr9 124595110 100.00% 1004609
chr10 130694993 100.00% 959682
chr11 122082543 100.00% 978356
chr12 120129022 100.00% 848850
chr13 120421639 100.00% 806702
chr14 124902244 100.00% 839018
chr15 104043685 100.00% 778853
chr16 98207768 100.00% 698967
chr17 94987271 100.00% 681492
chr18 90702639 100.00% 620747
chr19 61431566 100.00% 438949
chrM 16299 100.00% 322
chrX 171031299 100.00% 858049
chrY 91744698 100.00% 37039
GL456210.1 169725 100.00% 200
GL456211.1 241735 100.00% 336
GL456212.1 153618 100.00% 207
GL456213.1 39340 100.00% 164
GL456216.1 66673 100.00% 695
GL456219.1 175968 100.00% 158
GL456221.1 206961 100.00% 260
GL456233.1 336933 100.00% 3678
GL456239.1 40056 100.00% 51
GL456350.1 227966 100.00% 2056
GL456354.1 195993 100.00% 118
GL456359.1 22974 100.00% 25
GL456360.1 31704 100.00% 92
GL456366.1 47073 100.00% 106
GL456367.1 42057 100.00% 72
GL456368.1 20208 100.00% 69
GL456370.1 26764 100.00% 394
GL456372.1 28664 100.00% 21
GL456378.1 31602 100.00% 35
GL456379.1 72385 100.00% 57
GL456381.1 25871 100.00% 11
GL456382.1 23158 100.00% 40
GL456383.1 38659 100.00% 45
GL456385.1 35240 100.00% 21
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 15
GL456390.1 24668 100.00% 31
GL456392.1 23629 100.00% 22
GL456393.1 55711 100.00% 37
GL456394.1 24323 100.00% 5
GL456396.1 21240 100.00% 44
JH584292.1 14945 100.00% 39
JH584293.1 207968 100.00% 1156
JH584294.1 191905 100.00% 2386
JH584295.1 1976 100.00% 27
JH584296.1 199368 100.00% 125
JH584297.1 205776 100.00% 83
JH584298.1 184189 100.00% 62
JH584299.1 953012 100.00% 559
JH584300.1 182347 100.00% 10
JH584301.1 259875 100.00% 59
JH584302.1 155838 100.00% 14
JH584303.1 158099 100.00% 5
JH584304.1 114452 100.00% 991

Segment lengths

segments min max mean median
segments 18649910 50 3103500 146.43 50
global segment-length histogram

Files

Filename Size md5
L5_IT_RNA_RPKM.bw 107.65 MB ca1b12fea8b56277d722e78529937047
genomic_resource.yaml 1.21 KB fe19d0367ddf926ad06c50fd71041d39
statistics/