Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/L6_CTcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for L6_CT cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: L6_CT
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_L6_CT_rna_rpkm float

zemke2023Conserved_mouse_mop_L6_CT_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for L6_CT cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_L6_CT_rna_rpkm [0, 1.4e+05]
n
2,730,871,774
mean
1.07
sd
36.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 18374935
chr1 195471971 100.00% 1323621
chr2 182113224 100.00% 1447838
chr3 160039680 100.00% 961912
chr4 156508116 100.00% 1122143
chr5 151834684 100.00% 1121310
chr6 149736546 100.00% 1088261
chr7 145441459 100.00% 985467
chr8 129401213 100.00% 903167
chr9 124595110 100.00% 973699
chr10 130694993 100.00% 943833
chr11 122082543 100.00% 969687
chr12 120129022 100.00% 822601
chr13 120421639 100.00% 815404
chr14 124902244 100.00% 800982
chr15 104043685 100.00% 777745
chr16 98207768 100.00% 695496
chr17 94987271 100.00% 667376
chr18 90702639 100.00% 625400
chr19 61431566 100.00% 435140
chrM 16299 100.00% 325
chrX 171031299 100.00% 838925
chrY 91744698 100.00% 38106
GL456210.1 169725 100.00% 202
GL456211.1 241735 100.00% 341
GL456212.1 153618 100.00% 226
GL456213.1 39340 100.00% 109
GL456216.1 66673 100.00% 703
GL456219.1 175968 100.00% 173
GL456221.1 206961 100.00% 242
GL456233.1 336933 100.00% 4180
GL456239.1 40056 100.00% 62
GL456350.1 227966 100.00% 2367
GL456354.1 195993 100.00% 152
GL456359.1 22974 100.00% 44
GL456360.1 31704 100.00% 282
GL456366.1 47073 100.00% 228
GL456367.1 42057 100.00% 92
GL456368.1 20208 100.00% 83
GL456370.1 26764 100.00% 388
GL456372.1 28664 100.00% 19
GL456378.1 31602 100.00% 49
GL456379.1 72385 100.00% 55
GL456381.1 25871 100.00% 16
GL456382.1 23158 100.00% 40
GL456383.1 38659 100.00% 21
GL456385.1 35240 100.00% 21
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 15
GL456390.1 24668 100.00% 51
GL456392.1 23629 100.00% 42
GL456393.1 55711 100.00% 13
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 44
JH584292.1 14945 100.00% 38
JH584293.1 207968 100.00% 1378
JH584294.1 191905 100.00% 2600
JH584295.1 1976 100.00% 24
JH584296.1 199368 100.00% 114
JH584297.1 205776 100.00% 87
JH584298.1 184189 100.00% 83
JH584299.1 953012 100.00% 697
JH584300.1 182347 100.00% 6
JH584301.1 259875 100.00% 33
JH584302.1 155838 100.00% 7
JH584303.1 158099 100.00% 22
JH584304.1 114452 100.00% 1146

Segment lengths

segments min max mean median
segments 18374935 50 3101050 148.62 50
global segment-length histogram

Files

Filename Size md5
L6_CT_RNA_RPKM.bw 105.35 MB f28e58a10d44632e9130e3819172e6dc
genomic_resource.yaml 1.21 KB 806860cf9e4d8bb634b8021bb10bf61c
statistics/