Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/PVALBcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for PVALB cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: PVALB
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_PVALB_rna_rpkm float

zemke2023Conserved_mouse_mop_PVALB_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for PVALB cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_PVALB_rna_rpkm [0, 1.33e+05]
n
2,730,871,774
mean
1.07
sd
35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 13227777
chr1 195471971 100.00% 926752
chr2 182113224 100.00% 1074846
chr3 160039680 100.00% 665472
chr4 156508116 100.00% 746438
chr5 151834684 100.00% 848297
chr6 149736546 100.00% 801451
chr7 145441459 100.00% 707854
chr8 129401213 100.00% 680692
chr9 124595110 100.00% 727747
chr10 130694993 100.00% 686550
chr11 122082543 100.00% 673414
chr12 120129022 100.00% 591924
chr13 120421639 100.00% 576097
chr14 124902244 100.00% 595508
chr15 104043685 100.00% 522236
chr16 98207768 100.00% 541526
chr17 94987271 100.00% 523746
chr18 90702639 100.00% 440900
chr19 61431566 100.00% 288991
chrM 16299 100.00% 323
chrX 171031299 100.00% 577095
chrY 91744698 100.00% 20039
GL456210.1 169725 100.00% 64
GL456211.1 241735 100.00% 129
GL456212.1 153618 100.00% 89
GL456213.1 39340 100.00% 21
GL456216.1 66673 100.00% 679
GL456219.1 175968 100.00% 64
GL456221.1 206961 100.00% 134
GL456233.1 336933 100.00% 3094
GL456239.1 40056 100.00% 35
GL456350.1 227966 100.00% 1323
GL456354.1 195993 100.00% 56
GL456359.1 22974 100.00% 14
GL456360.1 31704 100.00% 44
GL456366.1 47073 100.00% 43
GL456367.1 42057 100.00% 28
GL456368.1 20208 100.00% 44
GL456370.1 26764 100.00% 347
GL456372.1 28664 100.00% 5
GL456378.1 31602 100.00% 16
GL456379.1 72385 100.00% 27
GL456381.1 25871 100.00% 5
GL456382.1 23158 100.00% 27
GL456383.1 38659 100.00% 17
GL456385.1 35240 100.00% 5
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 13
GL456390.1 24668 100.00% 1
GL456392.1 23629 100.00% 10
GL456393.1 55711 100.00% 9
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 21
JH584292.1 14945 100.00% 24
JH584293.1 207968 100.00% 672
JH584294.1 191905 100.00% 1745
JH584295.1 1976 100.00% 9
JH584296.1 199368 100.00% 34
JH584297.1 205776 100.00% 41
JH584298.1 184189 100.00% 31
JH584299.1 953012 100.00% 201
JH584300.1 182347 100.00% 9
JH584301.1 259875 100.00% 13
JH584302.1 155838 100.00% 1
JH584303.1 158099 100.00% 13
JH584304.1 114452 100.00% 720

Segment lengths

segments min max mean median
segments 13227777 50 3104050 206.45 50
global segment-length histogram

Files

Filename Size md5
PVALB_RNA_RPKM.bw 73.1 MB d9c4848183c7f3938b500993a06095a0
genomic_resource.yaml 1.21 KB f6576991e019781d9666db462daf1e40
statistics/