Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/SSTcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for SST cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: SST
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_SST_rna_rpkm float

zemke2023Conserved_mouse_mop_SST_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for SST cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_SST_rna_rpkm [0, 1.17e+05]
n
2,730,871,774
mean
1.07
sd
32.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 11717821
chr1 195471971 100.00% 833760
chr2 182113224 100.00% 940284
chr3 160039680 100.00% 613051
chr4 156508116 100.00% 671005
chr5 151834684 100.00% 726685
chr6 149736546 100.00% 702296
chr7 145441459 100.00% 614344
chr8 129401213 100.00% 590435
chr9 124595110 100.00% 643266
chr10 130694993 100.00% 623487
chr11 122082543 100.00% 627145
chr12 120129022 100.00% 535632
chr13 120421639 100.00% 495461
chr14 124902244 100.00% 535904
chr15 104043685 100.00% 444423
chr16 98207768 100.00% 491555
chr17 94987271 100.00% 453300
chr18 90702639 100.00% 380795
chr19 61431566 100.00% 253823
chrM 16299 100.00% 323
chrX 171031299 100.00% 517688
chrY 91744698 100.00% 15350
GL456210.1 169725 100.00% 57
GL456211.1 241735 100.00% 148
GL456212.1 153618 100.00% 100
GL456213.1 39340 100.00% 42
GL456216.1 66673 100.00% 494
GL456219.1 175968 100.00% 24
GL456221.1 206961 100.00% 101
GL456233.1 336933 100.00% 2451
GL456239.1 40056 100.00% 16
GL456350.1 227966 100.00% 978
GL456354.1 195993 100.00% 59
GL456359.1 22974 100.00% 5
GL456360.1 31704 100.00% 21
GL456366.1 47073 100.00% 21
GL456367.1 42057 100.00% 25
GL456368.1 20208 100.00% 30
GL456370.1 26764 100.00% 323
GL456372.1 28664 100.00% 1
GL456378.1 31602 100.00% 10
GL456379.1 72385 100.00% 29
GL456381.1 25871 100.00% 9
GL456382.1 23158 100.00% 16
GL456383.1 38659 100.00% 30
GL456385.1 35240 100.00% 9
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 5
GL456390.1 24668 100.00% 14
GL456392.1 23629 100.00% 13
GL456393.1 55711 100.00% 12
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 30
JH584292.1 14945 100.00% 9
JH584293.1 207968 100.00% 464
JH584294.1 191905 100.00% 1362
JH584295.1 1976 100.00% 1
JH584296.1 199368 100.00% 17
JH584297.1 205776 100.00% 35
JH584298.1 184189 100.00% 13
JH584299.1 953012 100.00% 200
JH584300.1 182347 100.00% 10
JH584301.1 259875 100.00% 5
JH584302.1 155838 100.00% 1
JH584303.1 158099 100.00% 5
JH584304.1 114452 100.00% 612

Segment lengths

segments min max mean median
segments 11717821 50 3103500 233.05 50
global segment-length histogram

Files

Filename Size md5
SST_RNA_RPKM.bw 63.68 MB d5edf580a8c38f5d4f5e0aacbce2743e
genomic_resource.yaml 1.19 KB 33c65bee46bfdad4a3936d05eef129fc
statistics/