Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/VIPcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for VIP cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: VIP
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_VIP_rna_rpkm float

zemke2023Conserved_mouse_mop_VIP_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for VIP cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_VIP_rna_rpkm [0, 1.09e+05]
n
2,730,871,774
mean
1.07
sd
28.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 7727829
chr1 195471971 100.00% 556576
chr2 182113224 100.00% 622223
chr3 160039680 100.00% 400056
chr4 156508116 100.00% 433790
chr5 151834684 100.00% 483342
chr6 149736546 100.00% 480234
chr7 145441459 100.00% 388331
chr8 129401213 100.00% 386611
chr9 124595110 100.00% 421358
chr10 130694993 100.00% 408772
chr11 122082543 100.00% 392039
chr12 120129022 100.00% 355897
chr13 120421639 100.00% 336776
chr14 124902244 100.00% 355296
chr15 104043685 100.00% 309944
chr16 98207768 100.00% 352910
chr17 94987271 100.00% 273481
chr18 90702639 100.00% 262252
chr19 61431566 100.00% 169622
chrM 16299 100.00% 314
chrX 171031299 100.00% 324523
chrY 91744698 100.00% 8857
GL456210.1 169725 100.00% 13
GL456211.1 241735 100.00% 45
GL456212.1 153618 100.00% 24
GL456213.1 39340 100.00% 20
GL456216.1 66673 100.00% 339
GL456219.1 175968 100.00% 13
GL456221.1 206961 100.00% 13
GL456233.1 336933 100.00% 1596
GL456239.1 40056 100.00% 1
GL456350.1 227966 100.00% 537
GL456354.1 195993 100.00% 12
GL456359.1 22974 100.00% 20
GL456360.1 31704 100.00% 5
GL456366.1 47073 100.00% 9
GL456367.1 42057 100.00% 5
GL456368.1 20208 100.00% 13
GL456370.1 26764 100.00% 224
GL456372.1 28664 100.00% 1
GL456378.1 31602 100.00% 18
GL456379.1 72385 100.00% 23
GL456381.1 25871 100.00% 1
GL456382.1 23158 100.00% 1
GL456383.1 38659 100.00% 5
GL456385.1 35240 100.00% 5
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 9
GL456390.1 24668 100.00% 1
GL456392.1 23629 100.00% 1
GL456393.1 55711 100.00% 1
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 1
JH584292.1 14945 100.00% 15
JH584293.1 207968 100.00% 266
JH584294.1 191905 100.00% 897
JH584295.1 1976 100.00% 1
JH584296.1 199368 100.00% 15
JH584297.1 205776 100.00% 9
JH584298.1 184189 100.00% 5
JH584299.1 953012 100.00% 58
JH584300.1 182347 100.00% 5
JH584301.1 259875 100.00% 5
JH584302.1 155838 100.00% 1
JH584303.1 158099 100.00% 1
JH584304.1 114452 100.00% 389

Segment lengths

segments min max mean median
segments 7727829 50 3216750 353.38 50
global segment-length histogram

Files

Filename Size md5
VIP_RNA_RPKM.bw 40.95 MB 22bdd7fe30000db68f2d38985d1264b4
genomic_resource.yaml 1.19 KB 6a52e190be50483a489f4ac5007518c4
statistics/