Resource

Id summary/zemke2023Conserved/pseudobulk_rna/mouse_mop/VLMCcontent_copy
Type position_score
Version 0
Summary Pseudo-bulk rna track in mouse_mop for VLMC cell type
Description
Labels
  • assay: 10x_Multiome
  • brain_region: mop
  • cell_type: VLMC
  • data_types: expression_signal
  • dataset: zemke2023Conserved
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: mouse
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2023Conserved_mouse_mop_VLMC_rna_rpkm float

zemke2023Conserved_mouse_mop_VLMC_rna_rpkm
Pseudo-bulk RPKM rna in mouse_mop for VLMC cell type
 HISTOGRAM FOR zemke2023Conserved_mouse_mop_VLMC_rna_rpkm [0, 1.66e+05]
n
2,730,871,774
mean
1.07
sd
44.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2730871774100.00% 8527827
chr1 195471971 100.00% 618532
chr2 182113224 100.00% 694138
chr3 160039680 100.00% 456493
chr4 156508116 100.00% 509742
chr5 151834684 100.00% 527566
chr6 149736546 100.00% 510302
chr7 145441459 100.00% 434803
chr8 129401213 100.00% 400341
chr9 124595110 100.00% 484794
chr10 130694993 100.00% 428493
chr11 122082543 100.00% 458291
chr12 120129022 100.00% 368958
chr13 120421639 100.00% 370040
chr14 124902244 100.00% 397163
chr15 104043685 100.00% 346944
chr16 98207768 100.00% 364232
chr17 94987271 100.00% 306222
chr18 90702639 100.00% 281606
chr19 61431566 100.00% 219983
chrM 16299 100.00% 322
chrX 171031299 100.00% 332104
chrY 91744698 100.00% 9215
GL456210.1 169725 100.00% 326
GL456211.1 241735 100.00% 233
GL456212.1 153618 100.00% 91
GL456213.1 39340 100.00% 17
GL456216.1 66673 100.00% 431
GL456219.1 175968 100.00% 21
GL456221.1 206961 100.00% 175
GL456233.1 336933 100.00% 1531
GL456239.1 40056 100.00% 9
GL456350.1 227966 100.00% 919
GL456354.1 195993 100.00% 10
GL456359.1 22974 100.00% 20
GL456360.1 31704 100.00% 441
GL456366.1 47073 100.00% 323
GL456367.1 42057 100.00% 1
GL456368.1 20208 100.00% 34
GL456370.1 26764 100.00% 255
GL456372.1 28664 100.00% 47
GL456378.1 31602 100.00% 13
GL456379.1 72385 100.00% 13
GL456381.1 25871 100.00% 1
GL456382.1 23158 100.00% 7
GL456383.1 38659 100.00% 5
GL456385.1 35240 100.00% 1
GL456387.1 24685 100.00% 1
GL456389.1 28772 100.00% 10
GL456390.1 24668 100.00% 5
GL456392.1 23629 100.00% 17
GL456393.1 55711 100.00% 1
GL456394.1 24323 100.00% 1
GL456396.1 21240 100.00% 5
JH584292.1 14945 100.00% 15
JH584293.1 207968 100.00% 465
JH584294.1 191905 100.00% 1519
JH584295.1 1976 100.00% 1
JH584296.1 199368 100.00% 9
JH584297.1 205776 100.00% 17
JH584298.1 184189 100.00% 5
JH584299.1 953012 100.00% 67
JH584300.1 182347 100.00% 6
JH584301.1 259875 100.00% 1
JH584302.1 155838 100.00% 1
JH584303.1 158099 100.00% 5
JH584304.1 114452 100.00% 468

Segment lengths

segments min max mean median
segments 8527827 50 3133050 320.23 50
global segment-length histogram

Files

Filename Size md5
VLMC_RNA_RPKM.bw 44.81 MB 03fa6d6b12e193f4604a233b3b1e06d6
genomic_resource.yaml 1.2 KB b4a94cca2ea08227936f8c5712c3c12b
statistics/