Resource
| Id |
summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_5D_rep1content_copy |
| Type |
ann_data |
| Version |
0 |
| Summary |
Cell Expression Matrix by_sample for Mop_5D_rep1 with genes_and_atac_peaks features
|
| Description |
|
| Labels |
- age: P56
- assay: 10x_Multiome
- data_types: gene_expression, peak_counts
- dataset: zemke2023Conserved
- donor_id: Mop_5D
- gene_models: reference/Mouse/gene_models/GENCODE/M22/basic/CHR
- modalities: RNA, ATAC
- neun_enriched: no
- processing_level: RPKM_normalized
- reference_genome: reference/Mouse/genome/GRCm38
- resolution: single_nucleus
- sample_id: Mop_5D_rep1
- sequencing_platform: Illumina
- sex: M
- species: mouse
- technology: 10x genomics
- vendor: 10x_Genomics
|
AnnData description
AnnData object with n_obs × n_vars = 16324 × 232594
var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
layers: None (.X)
var description
| Columns |
count |
unique |
top |
freq |
mean |
std |
min |
25% |
50% |
75% |
max |
| gene_symbols |
232594 |
232554 |
Ccl27a |
3 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| feature_types |
232594 |
2 |
Peaks |
200309 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| chrom |
232581 |
40 |
chr2 |
17813 |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
NaN |
| start |
232594.0 |
NaN |
NaN |
NaN |
74783196.664402 |
43835264.100464 |
-1.0 |
37508137.5 |
72026347.0 |
107090625.5 |
195241244.0 |
| end |
232594.0 |
NaN |
NaN |
NaN |
74784774.018049 |
43835201.313447 |
-1.0 |
37509654.75 |
72028880.0 |
107090827.25 |
195242153.0 |
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