Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Astro/age60-80/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Astro cell type for age_range age60-80
Description
Labels
  • age_range: age60-80
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Astro
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Astro_age60-80 float

zemke2024Epigenetic_RNA_Astro_age60-80

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Astro_age60-80 [0, 1.08e+05]
n
3,099,750,718
mean
0.939
sd
42

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 15612346
chr1 248956422 100.00% 1335680
chr2 242193529 100.00% 1306767
chr3 198295559 100.00% 1164665
chr4 190214555 100.00% 879219
chr5 181538259 100.00% 886312
chr6 170805979 100.00% 924001
chr7 159345973 100.00% 876536
chr8 145138636 100.00% 673284
chr9 138394717 100.00% 731169
chr10 133797422 100.00% 766287
chr11 135086622 100.00% 769712
chr12 133275309 100.00% 753785
chr13 114364328 100.00% 459234
chr14 107043718 100.00% 520136
chr15 101991189 100.00% 553827
chr16 90338345 100.00% 426779
chr17 83257441 100.00% 551494
chr18 80373285 100.00% 330315
chr19 58617616 100.00% 396883
chr20 64444167 100.00% 318184
chr21 46709983 100.00% 165804
chr22 50818468 100.00% 226462
chrM 16569 100.00% 332
chrX 156040895 100.00% 535018
chrY 57227415 100.00% 34191
GL000008.2 209709 683
GL000009.2 201709 876
GL000194.1 191469 1248
GL000195.1 182896 1120
GL000205.2 185591 984
GL000208.1 92689 56
GL000213.1 164239 71
GL000214.1 137718 516
GL000216.2 176608 68
GL000218.1 161147 1060
GL000219.1 179198 1893
GL000220.1 161802 1056
GL000221.1 155397 1086
GL000224.1 179693 978
GL000225.1 211173 55
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 23
KI270333.1 2699 7
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 3
KI270337.1 1121 3
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 3
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 3
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 51
KI270438.1 112505 7
KI270442.1 392061 248
KI270448.1 7992 13
KI270465.1 1774 1
KI270466.1 1233 5
KI270467.1 3920 21
KI270468.1 4055 12
KI270507.1 5353 1
KI270508.1 1951 7
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 15
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 32
KI270521.1 7642 3
KI270522.1 5674 5
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 20
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 3
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 13
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1629
KI270707.1 32032 255
KI270708.1 127682 103
KI270709.1 66860 45
KI270710.1 40176 11
KI270711.1 42210 481
KI270712.1 176043 383
KI270713.1 40745 259
KI270714.1 41717 195
KI270715.1 161471 115
KI270716.1 153799 106
KI270717.1 40062 164
KI270718.1 38054 526
KI270719.1 176845 778
KI270720.1 39050 85
KI270721.1 100316 180
KI270722.1 194050 123
KI270723.1 38115 41
KI270724.1 39555 33
KI270725.1 172810 185
KI270726.1 43739 16
KI270727.1 448248 905
KI270728.1 1872759 764
KI270729.1 280839 95
KI270730.1 112551 13
KI270731.1 150754 100
KI270732.1 41543 29
KI270733.1 179772 1072
KI270734.1 165050 630
KI270735.1 42811 17
KI270736.1 181920 5
KI270737.1 103838 43
KI270738.1 99375 66
KI270739.1 73985 17
KI270740.1 37240 42
KI270741.1 157432 512
KI270742.1 186739 1428
KI270743.1 210658 487
KI270744.1 168472 652
KI270745.1 41891 237
KI270746.1 66486 100
KI270747.1 198735 74
KI270748.1 93321 252
KI270749.1 158759 148
KI270750.1 148850 56
KI270751.1 150742 308
KI270752.1 27745 5
KI270753.1 62944 36
KI270754.1 40191 5
KI270755.1 36723 117
KI270756.1 79590 1
KI270757.1 71251 13

Segment lengths

segments min max mean median
segments 15612346 2 30167950 198.54 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Astro_age60-80.bw 87.17 MB aab8a5407097f30fb4e1580495177b64
genomic_resource.yaml 1.11 KB f2e4bea32bd20071c8419a0c0b5d1011
statistics/