Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Chandelier/age40-60/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Chandelier cell type for age_range age40-60
Description
Labels
  • age_range: age40-60
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Chandelier
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Chandelier_age40-60 float

zemke2024Epigenetic_RNA_Chandelier_age40-60

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Chandelier_age40-60 [0, 9.01e+04]
n
3,099,750,718
mean
0.961
sd
38.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 2166051
chr1 248956422 100.00% 169220
chr2 242193529 100.00% 207315
chr3 198295559 100.00% 159990
chr4 190214555 100.00% 119350
chr5 181538259 100.00% 132015
chr6 170805979 100.00% 114006
chr7 159345973 100.00% 142762
chr8 145138636 100.00% 104706
chr9 138394717 100.00% 92441
chr10 133797422 100.00% 91858
chr11 135086622 100.00% 114830
chr12 133275309 100.00% 123327
chr13 114364328 100.00% 68825
chr14 107043718 100.00% 73552
chr15 101991189 100.00% 69792
chr16 90338345 100.00% 63846
chr17 83257441 100.00% 64357
chr18 80373285 100.00% 41847
chr19 58617616 100.00% 50061
chr20 64444167 100.00% 37711
chr21 46709983 100.00% 24679
chr22 50818468 100.00% 25763
chrM 16569 100.00% 327
chrX 156040895 100.00% 68303
chrY 57227415 100.00% 2013
GL000008.2 209709 21
GL000009.2 201709 53
GL000194.1 191469 131
GL000195.1 182896 64
GL000205.2 185591 27
GL000208.1 92689 7
GL000213.1 164239 8
GL000214.1 137718 27
GL000216.2 176608 5
GL000218.1 161147 186
GL000219.1 179198 254
GL000220.1 161802 276
GL000221.1 155397 59
GL000224.1 179693 33
GL000225.1 211173 5
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 1
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 1
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 5
KI270438.1 112505 1
KI270442.1 392061 33
KI270448.1 7992 5
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 1
KI270468.1 4055 1
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 1
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 3
KI270521.1 7642 1
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 1
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 9
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 162
KI270707.1 32032 38
KI270708.1 127682 9
KI270709.1 66860 5
KI270710.1 40176 1
KI270711.1 42210 73
KI270712.1 176043 127
KI270713.1 40745 23
KI270714.1 41717 15
KI270715.1 161471 5
KI270716.1 153799 5
KI270717.1 40062 32
KI270718.1 38054 222
KI270719.1 176845 188
KI270720.1 39050 8
KI270721.1 100316 25
KI270722.1 194050 9
KI270723.1 38115 3
KI270724.1 39555 5
KI270725.1 172810 17
KI270726.1 43739 1
KI270727.1 448248 110
KI270728.1 1872759 71
KI270729.1 280839 14
KI270730.1 112551 1
KI270731.1 150754 3
KI270732.1 41543 7
KI270733.1 179772 326
KI270734.1 165050 27
KI270735.1 42811 1
KI270736.1 181920 1
KI270737.1 103838 1
KI270738.1 99375 7
KI270739.1 73985 1
KI270740.1 37240 1
KI270741.1 157432 37
KI270742.1 186739 100
KI270743.1 210658 18
KI270744.1 168472 32
KI270745.1 41891 11
KI270746.1 66486 18
KI270747.1 198735 5
KI270748.1 93321 30
KI270749.1 158759 28
KI270750.1 148850 1
KI270751.1 150742 13
KI270752.1 27745 1
KI270753.1 62944 1
KI270754.1 40191 1
KI270755.1 36723 5
KI270756.1 79590 1
KI270757.1 71251 1

Segment lengths

segments min max mean median
segments 2166051 19 30337650 1431.06 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Chandelier_age40-60.bw 11.56 MB f16556e16a37f3d650e32c23a8104053
genomic_resource.yaml 1.12 KB 0717ad610925578286ce98a6faa18796
statistics/