Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Chandelier/age80-100/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Chandelier cell type for age_range age80-100
Description
Labels
  • age_range: age80-100
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Chandelier
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Chandelier_age80-100 float

zemke2024Epigenetic_RNA_Chandelier_age80-100

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Chandelier_age80-100 [0, 5.97e+04]
n
3,099,750,718
mean
0.929
sd
29.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 6556214
chr1 248956422 100.00% 536595
chr2 242193529 100.00% 581968
chr3 198295559 100.00% 490220
chr4 190214555 100.00% 380492
chr5 181538259 100.00% 388361
chr6 170805979 100.00% 372937
chr7 159345973 100.00% 423067
chr8 145138636 100.00% 314446
chr9 138394717 100.00% 276871
chr10 133797422 100.00% 300166
chr11 135086622 100.00% 336681
chr12 133275309 100.00% 362333
chr13 114364328 100.00% 204291
chr14 107043718 100.00% 216452
chr15 101991189 100.00% 212113
chr16 90338345 100.00% 187373
chr17 83257441 100.00% 202641
chr18 80373285 100.00% 127939
chr19 58617616 100.00% 138538
chr20 64444167 100.00% 121831
chr21 46709983 100.00% 68681
chr22 50818468 100.00% 81438
chrM 16569 100.00% 330
chrX 156040895 100.00% 213236
chrY 57227415 100.00% 9717
GL000008.2 209709 119
GL000009.2 201709 156
GL000194.1 191469 440
GL000195.1 182896 39
GL000205.2 185591 30
GL000208.1 92689 15
GL000213.1 164239 25
GL000214.1 137718 46
GL000216.2 176608 13
GL000218.1 161147 283
GL000219.1 179198 646
GL000220.1 161802 410
GL000221.1 155397 258
GL000224.1 179693 164
GL000225.1 211173 7
GL000226.1 15008 1
KI270302.1 2274 3
KI270303.1 1942 1
KI270304.1 2165 3
KI270305.1 1472 1
KI270310.1 1201 3
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 13
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 1
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 5
KI270438.1 112505 5
KI270442.1 392061 97
KI270448.1 7992 1
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 1
KI270468.1 4055 3
KI270507.1 5353 1
KI270508.1 1951 3
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 5
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 7
KI270521.1 7642 1
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 1
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 3
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 285
KI270707.1 32032 63
KI270708.1 127682 9
KI270709.1 66860 4
KI270710.1 40176 7
KI270711.1 42210 182
KI270712.1 176043 285
KI270713.1 40745 100
KI270714.1 41717 27
KI270715.1 161471 17
KI270716.1 153799 19
KI270717.1 40062 65
KI270718.1 38054 476
KI270719.1 176845 538
KI270720.1 39050 18
KI270721.1 100316 65
KI270722.1 194050 17
KI270723.1 38115 4
KI270724.1 39555 3
KI270725.1 172810 60
KI270726.1 43739 3
KI270727.1 448248 497
KI270728.1 1872759 265
KI270729.1 280839 17
KI270730.1 112551 1
KI270731.1 150754 21
KI270732.1 41543 14
KI270733.1 179772 425
KI270734.1 165050 39
KI270735.1 42811 9
KI270736.1 181920 5
KI270737.1 103838 17
KI270738.1 99375 31
KI270739.1 73985 3
KI270740.1 37240 5
KI270741.1 157432 70
KI270742.1 186739 436
KI270743.1 210658 90
KI270744.1 168472 139
KI270745.1 41891 62
KI270746.1 66486 51
KI270747.1 198735 17
KI270748.1 93321 56
KI270749.1 158759 39
KI270750.1 148850 9
KI270751.1 150742 23
KI270752.1 27745 3
KI270753.1 62944 5
KI270754.1 40191 1
KI270755.1 36723 7
KI270756.1 79590 1
KI270757.1 71251 1

Segment lengths

segments min max mean median
segments 6556214 2 30209050 472.8 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Chandelier_age80-100.bw 34.34 MB 28c22c99b62cb98de6b27561534777a0
genomic_resource.yaml 1.13 KB 912ec7eafa013629814f167ebdd1f1fc
statistics/