Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/DG/age20-40/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for DG cell type for age_range age20-40
Description
Labels
  • age_range: age20-40
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: DG
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_DG_age20-40 float

zemke2024Epigenetic_RNA_DG_age20-40

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_DG_age20-40 [0, 7.07e+04]
n
3,099,750,718
mean
0.959
sd
30.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 14284408
chr1 248956422 100.00% 1228823
chr2 242193529 100.00% 1257248
chr3 198295559 100.00% 1061156
chr4 190214555 100.00% 784990
chr5 181538259 100.00% 859403
chr6 170805979 100.00% 836650
chr7 159345973 100.00% 833189
chr8 145138636 100.00% 682474
chr9 138394717 100.00% 615881
chr10 133797422 100.00% 661951
chr11 135086622 100.00% 639968
chr12 133275309 100.00% 675973
chr13 114364328 100.00% 414713
chr14 107043718 100.00% 468919
chr15 101991189 100.00% 445113
chr16 90338345 100.00% 420913
chr17 83257441 100.00% 478767
chr18 80373285 100.00% 329616
chr19 58617616 100.00% 329827
chr20 64444167 100.00% 277575
chr21 46709983 100.00% 176961
chr22 50818468 100.00% 198197
chrM 16569 100.00% 332
chrX 156040895 100.00% 551317
chrY 57227415 100.00% 29521
GL000008.2 209709 1072
GL000009.2 201709 791
GL000194.1 191469 906
GL000195.1 182896 698
GL000205.2 185591 621
GL000208.1 92689 59
GL000213.1 164239 70
GL000214.1 137718 371
GL000216.2 176608 28
GL000218.1 161147 759
GL000219.1 179198 1877
GL000220.1 161802 686
GL000221.1 155397 990
GL000224.1 179693 552
GL000225.1 211173 49
GL000226.1 15008 1
KI270302.1 2274 3
KI270303.1 1942 7
KI270304.1 2165 7
KI270305.1 1472 1
KI270310.1 1201 9
KI270311.1 12399 3
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 3
KI270329.1 1040 1
KI270330.1 1652 13
KI270333.1 2699 5
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 3
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 3
KI270378.1 1048 1
KI270379.1 1045 7
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 3
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 39
KI270438.1 112505 9
KI270442.1 392061 367
KI270448.1 7992 15
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 5
KI270468.1 4055 13
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 4
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 11
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 39
KI270521.1 7642 11
KI270522.1 5674 3
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 13
KI270539.1 993 3
KI270544.1 1202 3
KI270548.1 1599 1
KI270579.1 31033 3
KI270580.1 1553 2
KI270581.1 7046 5
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 8
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1449
KI270707.1 32032 213
KI270708.1 127682 82
KI270709.1 66860 47
KI270710.1 40176 7
KI270711.1 42210 399
KI270712.1 176043 840
KI270713.1 40745 130
KI270714.1 41717 120
KI270715.1 161471 148
KI270716.1 153799 113
KI270717.1 40062 220
KI270718.1 38054 679
KI270719.1 176845 1544
KI270720.1 39050 153
KI270721.1 100316 94
KI270722.1 194050 90
KI270723.1 38115 40
KI270724.1 39555 26
KI270725.1 172810 193
KI270726.1 43739 13
KI270727.1 448248 696
KI270728.1 1872759 1077
KI270729.1 280839 101
KI270730.1 112551 15
KI270731.1 150754 68
KI270732.1 41543 31
KI270733.1 179772 718
KI270734.1 165050 181
KI270735.1 42811 25
KI270736.1 181920 56
KI270737.1 103838 44
KI270738.1 99375 92
KI270739.1 73985 16
KI270740.1 37240 24
KI270741.1 157432 450
KI270742.1 186739 1336
KI270743.1 210658 653
KI270744.1 168472 500
KI270745.1 41891 102
KI270746.1 66486 99
KI270747.1 198735 78
KI270748.1 93321 158
KI270749.1 158759 153
KI270750.1 148850 383
KI270751.1 150742 257
KI270752.1 27745 5
KI270753.1 62944 327
KI270754.1 40191 351
KI270755.1 36723 94
KI270756.1 79590 7
KI270757.1 71251 10

Segment lengths

segments min max mean median
segments 14284408 2 30205400 217 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_DG_age20-40.bw 79.2 MB 750cf1d176dce7a843cb063f9598a290
genomic_resource.yaml 1.09 KB 8828fb6675e999a81b8bdee284830dff
statistics/