Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/DG/age60-80/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for DG cell type for age_range age60-80
Description
Labels
  • age_range: age60-80
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: DG
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_DG_age60-80 float

zemke2024Epigenetic_RNA_DG_age60-80

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_DG_age60-80 [0, 4.04e+04]
n
3,099,750,718
mean
0.948
sd
19.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 15344501
chr1 248956422 100.00% 1314050
chr2 242193529 100.00% 1345623
chr3 198295559 100.00% 1117404
chr4 190214555 100.00% 835671
chr5 181538259 100.00% 923140
chr6 170805979 100.00% 888207
chr7 159345973 100.00% 900917
chr8 145138636 100.00% 733152
chr9 138394717 100.00% 666172
chr10 133797422 100.00% 723616
chr11 135086622 100.00% 680704
chr12 133275309 100.00% 730064
chr13 114364328 100.00% 448969
chr14 107043718 100.00% 499134
chr15 101991189 100.00% 478204
chr16 90338345 100.00% 469625
chr17 83257441 100.00% 522602
chr18 80373285 100.00% 354854
chr19 58617616 100.00% 358979
chr20 64444167 100.00% 301179
chr21 46709983 100.00% 187088
chr22 50818468 100.00% 216675
chrM 16569 100.00% 332
chrX 156040895 100.00% 594493
chrY 57227415 100.00% 27701
GL000008.2 209709 1125
GL000009.2 201709 798
GL000194.1 191469 1034
GL000195.1 182896 629
GL000205.2 185591 709
GL000208.1 92689 71
GL000213.1 164239 70
GL000214.1 137718 379
GL000216.2 176608 107
GL000218.1 161147 1026
GL000219.1 179198 2144
GL000220.1 161802 667
GL000221.1 155397 1001
GL000224.1 179693 906
GL000225.1 211173 248
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 7
KI270305.1 1472 1
KI270310.1 1201 14
KI270311.1 12399 3
KI270312.1 998 1
KI270315.1 2276 7
KI270316.1 1444 1
KI270317.1 37690 3
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 18
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 3
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 2
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 3
KI270378.1 1048 1
KI270379.1 1045 3
KI270381.1 1930 1
KI270382.1 4215 3
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 50
KI270438.1 112505 7
KI270442.1 392061 372
KI270448.1 7992 13
KI270465.1 1774 1
KI270466.1 1233 3
KI270467.1 3920 1
KI270468.1 4055 13
KI270507.1 5353 1
KI270508.1 1951 3
KI270509.1 2318 3
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 14
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 27
KI270521.1 7642 8
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 22
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 5
KI270580.1 1553 1
KI270581.1 7046 3
KI270582.1 6504 7
KI270583.1 1400 1
KI270584.1 4513 3
KI270587.1 2969 1
KI270588.1 6158 3
KI270589.1 44474 22
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 3
KI270706.1 175055 1524
KI270707.1 32032 246
KI270708.1 127682 87
KI270709.1 66860 31
KI270710.1 40176 28
KI270711.1 42210 395
KI270712.1 176043 788
KI270713.1 40745 164
KI270714.1 41717 134
KI270715.1 161471 35
KI270716.1 153799 57
KI270717.1 40062 209
KI270718.1 38054 683
KI270719.1 176845 1514
KI270720.1 39050 131
KI270721.1 100316 97
KI270722.1 194050 114
KI270723.1 38115 41
KI270724.1 39555 23
KI270725.1 172810 190
KI270726.1 43739 17
KI270727.1 448248 678
KI270728.1 1872759 1041
KI270729.1 280839 109
KI270730.1 112551 7
KI270731.1 150754 85
KI270732.1 41543 37
KI270733.1 179772 664
KI270734.1 165050 243
KI270735.1 42811 18
KI270736.1 181920 39
KI270737.1 103838 42
KI270738.1 99375 49
KI270739.1 73985 13
KI270740.1 37240 57
KI270741.1 157432 532
KI270742.1 186739 1318
KI270743.1 210658 601
KI270744.1 168472 517
KI270745.1 41891 140
KI270746.1 66486 141
KI270747.1 198735 73
KI270748.1 93321 108
KI270749.1 158759 141
KI270750.1 148850 237
KI270751.1 150742 228
KI270752.1 27745 1
KI270753.1 62944 228
KI270754.1 40191 288
KI270755.1 36723 158
KI270756.1 79590 3
KI270757.1 71251 7

Segment lengths

segments min max mean median
segments 15344501 2 30188750 202.01 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_DG_age60-80.bw 86.24 MB c7a9c078fb9d51d11cf3828c802d82b5
genomic_resource.yaml 1.09 KB 6b6eb3403080dc26c41de3d14038ebab
statistics/