Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Endo/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Endo cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Endo
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Endo_all float

zemke2024Epigenetic_RNA_Endo_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Endo_all [0, 6.87e+04]
n
3,099,750,718
mean
0.977
sd
51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 5080411
chr1 248956422 100.00% 446403
chr2 242193529 100.00% 446142
chr3 198295559 100.00% 378644
chr4 190214555 100.00% 281544
chr5 181538259 100.00% 305702
chr6 170805979 100.00% 302425
chr7 159345973 100.00% 291444
chr8 145138636 100.00% 204584
chr9 138394717 100.00% 223183
chr10 133797422 100.00% 262687
chr11 135086622 100.00% 222700
chr12 133275309 100.00% 242716
chr13 114364328 100.00% 160957
chr14 107043718 100.00% 172188
chr15 101991189 100.00% 184617
chr16 90338345 100.00% 144441
chr17 83257441 100.00% 180343
chr18 80373285 100.00% 104700
chr19 58617616 100.00% 123029
chr20 64444167 100.00% 96161
chr21 46709983 100.00% 63580
chr22 50818468 100.00% 73534
chrM 16569 100.00% 332
chrX 156040895 100.00% 150741
chrY 57227415 100.00% 10163
GL000008.2 209709 140
GL000009.2 201709 209
GL000194.1 191469 492
GL000195.1 182896 404
GL000205.2 185591 222
GL000208.1 92689 11
GL000213.1 164239 70
GL000214.1 137718 69
GL000216.2 176608 18
GL000218.1 161147 498
GL000219.1 179198 699
GL000220.1 161802 562
GL000221.1 155397 274
GL000224.1 179693 142
GL000225.1 211173 5
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 13
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 1
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 9
KI270438.1 112505 5
KI270442.1 392061 67
KI270448.1 7992 3
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 3
KI270468.1 4055 1
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 1
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 5
KI270521.1 7642 5
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 5
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 3
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 3
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 3
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 409
KI270707.1 32032 33
KI270708.1 127682 26
KI270709.1 66860 5
KI270710.1 40176 3
KI270711.1 42210 172
KI270712.1 176043 56
KI270713.1 40745 52
KI270714.1 41717 51
KI270715.1 161471 3
KI270716.1 153799 1
KI270717.1 40062 79
KI270718.1 38054 104
KI270719.1 176845 215
KI270720.1 39050 21
KI270721.1 100316 29
KI270722.1 194050 21
KI270723.1 38115 6
KI270724.1 39555 3
KI270725.1 172810 31
KI270726.1 43739 3
KI270727.1 448248 118
KI270728.1 1872759 284
KI270729.1 280839 21
KI270730.1 112551 1
KI270731.1 150754 22
KI270732.1 41543 7
KI270733.1 179772 563
KI270734.1 165050 128
KI270735.1 42811 5
KI270736.1 181920 1
KI270737.1 103838 3
KI270738.1 99375 16
KI270739.1 73985 1
KI270740.1 37240 1
KI270741.1 157432 73
KI270742.1 186739 322
KI270743.1 210658 67
KI270744.1 168472 202
KI270745.1 41891 35
KI270746.1 66486 24
KI270747.1 198735 13
KI270748.1 93321 43
KI270749.1 158759 29
KI270750.1 148850 5
KI270751.1 150742 67
KI270752.1 27745 1
KI270753.1 62944 7
KI270754.1 40191 1
KI270755.1 36723 35
KI270756.1 79590 1
KI270757.1 71251 3

Segment lengths

segments min max mean median
segments 5080411 2 30197100 610.14 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Endo.bw 27.34 MB f3a4c95054288490b795669d66098f09
genomic_resource.yaml 1.08 KB e20c4a0dcd2ddd0127bb9f7daf6b30f1
statistics/