Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Micro1/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Micro1 cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Micro1
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Micro1_all float

zemke2024Epigenetic_RNA_Micro1_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Micro1_all [0, 4.22e+04]
n
3,099,750,718
mean
0.942
sd
25.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 14432477
chr1 248956422 100.00% 1278451
chr2 242193529 100.00% 1166912
chr3 198295559 100.00% 999867
chr4 190214555 100.00% 781756
chr5 181538259 100.00% 804924
chr6 170805979 100.00% 870688
chr7 159345973 100.00% 851661
chr8 145138636 100.00% 608575
chr9 138394717 100.00% 627301
chr10 133797422 100.00% 716861
chr11 135086622 100.00% 642126
chr12 133275309 100.00% 710478
chr13 114364328 100.00% 370802
chr14 107043718 100.00% 484334
chr15 101991189 100.00% 482682
chr16 90338345 100.00% 446034
chr17 83257441 100.00% 557487
chr18 80373285 100.00% 315090
chr19 58617616 100.00% 401428
chr20 64444167 100.00% 309254
chr21 46709983 100.00% 192220
chr22 50818468 100.00% 230492
chrM 16569 100.00% 331
chrX 156040895 100.00% 517266
chrY 57227415 100.00% 38349
GL000008.2 209709 918
GL000009.2 201709 1164
GL000194.1 191469 1126
GL000195.1 182896 1215
GL000205.2 185591 1537
GL000208.1 92689 81
GL000213.1 164239 40
GL000214.1 137718 659
GL000216.2 176608 46
GL000218.1 161147 1051
GL000219.1 179198 1669
GL000220.1 161802 1132
GL000221.1 155397 1140
GL000224.1 179693 667
GL000225.1 211173 59
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 15
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 3
KI270362.1 3530 3
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 7
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 51
KI270438.1 112505 29
KI270442.1 392061 320
KI270448.1 7992 15
KI270465.1 1774 1
KI270466.1 1233 9
KI270467.1 3920 12
KI270468.1 4055 1
KI270507.1 5353 3
KI270508.1 1951 3
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 22
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 37
KI270521.1 7642 6
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 20
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 3
KI270580.1 1553 1
KI270581.1 7046 3
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 21
KI270590.1 4685 1
KI270591.1 5796 6
KI270593.1 3041 1
KI270706.1 175055 2077
KI270707.1 32032 168
KI270708.1 127682 153
KI270709.1 66860 13
KI270710.1 40176 15
KI270711.1 42210 559
KI270712.1 176043 336
KI270713.1 40745 207
KI270714.1 41717 56
KI270715.1 161471 1
KI270716.1 153799 3
KI270717.1 40062 62
KI270718.1 38054 666
KI270719.1 176845 867
KI270720.1 39050 161
KI270721.1 100316 175
KI270722.1 194050 211
KI270723.1 38115 35
KI270724.1 39555 12
KI270725.1 172810 102
KI270726.1 43739 17
KI270727.1 448248 803
KI270728.1 1872759 1000
KI270729.1 280839 40
KI270730.1 112551 5
KI270731.1 150754 64
KI270732.1 41543 28
KI270733.1 179772 1078
KI270734.1 165050 141
KI270735.1 42811 25
KI270736.1 181920 13
KI270737.1 103838 16
KI270738.1 99375 18
KI270739.1 73985 11
KI270740.1 37240 1
KI270741.1 157432 334
KI270742.1 186739 1511
KI270743.1 210658 594
KI270744.1 168472 754
KI270745.1 41891 405
KI270746.1 66486 127
KI270747.1 198735 24
KI270748.1 93321 193
KI270749.1 158759 152
KI270750.1 148850 79
KI270751.1 150742 520
KI270752.1 27745 1
KI270753.1 62944 19
KI270754.1 40191 3
KI270755.1 36723 71
KI270756.1 79590 1
KI270757.1 71251 5

Segment lengths

segments min max mean median
segments 14432477 2 30007500 214.78 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Micro1.bw 80.97 MB d9b05685be8373d35263787ea26ed817
genomic_resource.yaml 1.09 KB ddad433bbb0ea602221ec1aaed2824af
statistics/