Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Micro2/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Micro2 cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Micro2
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Micro2_all float

zemke2024Epigenetic_RNA_Micro2_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Micro2_all [0, 6.37e+04]
n
3,099,750,718
mean
0.95
sd
29.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 10936252
chr1 248956422 100.00% 984727
chr2 242193529 100.00% 896886
chr3 198295559 100.00% 764441
chr4 190214555 100.00% 590979
chr5 181538259 100.00% 612414
chr6 170805979 100.00% 668569
chr7 159345973 100.00% 655183
chr8 145138636 100.00% 462869
chr9 138394717 100.00% 467128
chr10 133797422 100.00% 556563
chr11 135086622 100.00% 476587
chr12 133275309 100.00% 538408
chr13 114364328 100.00% 280287
chr14 107043718 100.00% 356850
chr15 101991189 100.00% 370906
chr16 90338345 100.00% 336430
chr17 83257441 100.00% 425978
chr18 80373285 100.00% 242424
chr19 58617616 100.00% 290670
chr20 64444167 100.00% 227596
chr21 46709983 100.00% 142798
chr22 50818468 100.00% 166465
chrM 16569 100.00% 331
chrX 156040895 100.00% 376131
chrY 57227415 100.00% 24490
GL000008.2 209709 638
GL000009.2 201709 798
GL000194.1 191469 1023
GL000195.1 182896 1067
GL000205.2 185591 1312
GL000208.1 92689 33
GL000213.1 164239 34
GL000214.1 137718 378
GL000216.2 176608 20
GL000218.1 161147 896
GL000219.1 179198 1377
GL000220.1 161802 817
GL000221.1 155397 887
GL000224.1 179693 492
GL000225.1 211173 32
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 12
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 5
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 25
KI270438.1 112505 9
KI270442.1 392061 240
KI270448.1 7992 6
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 10
KI270468.1 4055 1
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 5
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 15
KI270521.1 7642 3
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 7
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 3
KI270581.1 7046 1
KI270582.1 6504 3
KI270583.1 1400 3
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 5
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1422
KI270707.1 32032 97
KI270708.1 127682 78
KI270709.1 66860 13
KI270710.1 40176 7
KI270711.1 42210 478
KI270712.1 176043 185
KI270713.1 40745 114
KI270714.1 41717 35
KI270715.1 161471 1
KI270716.1 153799 1
KI270717.1 40062 13
KI270718.1 38054 626
KI270719.1 176845 624
KI270720.1 39050 71
KI270721.1 100316 92
KI270722.1 194050 96
KI270723.1 38115 36
KI270724.1 39555 20
KI270725.1 172810 62
KI270726.1 43739 19
KI270727.1 448248 812
KI270728.1 1872759 536
KI270729.1 280839 29
KI270730.1 112551 1
KI270731.1 150754 29
KI270732.1 41543 9
KI270733.1 179772 797
KI270734.1 165050 101
KI270735.1 42811 19
KI270736.1 181920 16
KI270737.1 103838 13
KI270738.1 99375 11
KI270739.1 73985 9
KI270740.1 37240 1
KI270741.1 157432 369
KI270742.1 186739 1159
KI270743.1 210658 394
KI270744.1 168472 515
KI270745.1 41891 265
KI270746.1 66486 63
KI270747.1 198735 13
KI270748.1 93321 122
KI270749.1 158759 88
KI270750.1 148850 26
KI270751.1 150742 363
KI270752.1 27745 3
KI270753.1 62944 9
KI270754.1 40191 1
KI270755.1 36723 31
KI270756.1 79590 1
KI270757.1 71251 3

Segment lengths

segments min max mean median
segments 10936252 2 30198200 283.44 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Micro2.bw 60.2 MB 28e113b51aa7c273b2060a7d76ceac3c
genomic_resource.yaml 1.09 KB 6b6af375fb9680e3a240810e9935a015
statistics/