Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Microglia/age20-40/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Microglia cell type for age_range age20-40
Description
Labels
  • age_range: age20-40
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Microglia
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Microglia_age20-40 float

zemke2024Epigenetic_RNA_Microglia_age20-40

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Microglia_age20-40 [0, 5.03e+04]
n
3,099,750,718
mean
0.936
sd
30.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 9956808
chr1 248956422 100.00% 897243
chr2 242193529 100.00% 807673
chr3 198295559 100.00% 676728
chr4 190214555 100.00% 535110
chr5 181538259 100.00% 560213
chr6 170805979 100.00% 591449
chr7 159345973 100.00% 595909
chr8 145138636 100.00% 412275
chr9 138394717 100.00% 429389
chr10 133797422 100.00% 522562
chr11 135086622 100.00% 432723
chr12 133275309 100.00% 503045
chr13 114364328 100.00% 259530
chr14 107043718 100.00% 323400
chr15 101991189 100.00% 339036
chr16 90338345 100.00% 307071
chr17 83257441 100.00% 394353
chr18 80373285 100.00% 220640
chr19 58617616 100.00% 263919
chr20 64444167 100.00% 211209
chr21 46709983 100.00% 132598
chr22 50818468 100.00% 156613
chrM 16569 100.00% 329
chrX 156040895 100.00% 340133
chrY 57227415 100.00% 26779
GL000008.2 209709 439
GL000009.2 201709 628
GL000194.1 191469 910
GL000195.1 182896 889
GL000205.2 185591 1136
GL000208.1 92689 38
GL000213.1 164239 15
GL000214.1 137718 362
GL000216.2 176608 24
GL000218.1 161147 717
GL000219.1 179198 1230
GL000220.1 161802 805
GL000221.1 155397 796
GL000224.1 179693 416
GL000225.1 211173 30
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 12
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 3
KI270362.1 3530 3
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 7
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 14
KI270438.1 112505 17
KI270442.1 392061 193
KI270448.1 7992 7
KI270465.1 1774 1
KI270466.1 1233 9
KI270467.1 3920 10
KI270468.1 4055 1
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 5
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 17
KI270521.1 7642 3
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 16
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 13
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1257
KI270707.1 32032 82
KI270708.1 127682 77
KI270709.1 66860 1
KI270710.1 40176 15
KI270711.1 42210 384
KI270712.1 176043 215
KI270713.1 40745 95
KI270714.1 41717 16
KI270715.1 161471 1
KI270716.1 153799 3
KI270717.1 40062 23
KI270718.1 38054 549
KI270719.1 176845 524
KI270720.1 39050 84
KI270721.1 100316 107
KI270722.1 194050 102
KI270723.1 38115 16
KI270724.1 39555 1
KI270725.1 172810 51
KI270726.1 43739 10
KI270727.1 448248 280
KI270728.1 1872759 511
KI270729.1 280839 21
KI270730.1 112551 1
KI270731.1 150754 28
KI270732.1 41543 11
KI270733.1 179772 759
KI270734.1 165050 70
KI270735.1 42811 9
KI270736.1 181920 3
KI270737.1 103838 9
KI270738.1 99375 9
KI270739.1 73985 5
KI270740.1 37240 1
KI270741.1 157432 178
KI270742.1 186739 953
KI270743.1 210658 275
KI270744.1 168472 439
KI270745.1 41891 211
KI270746.1 66486 70
KI270747.1 198735 13
KI270748.1 93321 82
KI270749.1 158759 69
KI270750.1 148850 47
KI270751.1 150742 275
KI270752.1 27745 1
KI270753.1 62944 11
KI270754.1 40191 3
KI270755.1 36723 69
KI270756.1 79590 1
KI270757.1 71251 1

Segment lengths

segments min max mean median
segments 9956808 2 30033450 311.32 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Microglia_age20-40.bw 54.19 MB b0f07768c822e0a133d2f0258498038d
genomic_resource.yaml 1.12 KB 002fc1983b6d93be4b925ec9c7a7757e
statistics/