Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Microglia/age40-60/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Microglia cell type for age_range age40-60
Description
Labels
  • age_range: age40-60
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Microglia
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Microglia_age40-60 float

zemke2024Epigenetic_RNA_Microglia_age40-60

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Microglia_age40-60 [0, 4.75e+04]
n
3,099,750,718
mean
0.953
sd
25.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 8321692
chr1 248956422 100.00% 758515
chr2 242193529 100.00% 676250
chr3 198295559 100.00% 565762
chr4 190214555 100.00% 443695
chr5 181538259 100.00% 463671
chr6 170805979 100.00% 491466
chr7 159345973 100.00% 506418
chr8 145138636 100.00% 343098
chr9 138394717 100.00% 350787
chr10 133797422 100.00% 436713
chr11 135086622 100.00% 364116
chr12 133275309 100.00% 418693
chr13 114364328 100.00% 215635
chr14 107043718 100.00% 266854
chr15 101991189 100.00% 284040
chr16 90338345 100.00% 260625
chr17 83257441 100.00% 334361
chr18 80373285 100.00% 182850
chr19 58617616 100.00% 228573
chr20 64444167 100.00% 173513
chr21 46709983 100.00% 115663
chr22 50818468 100.00% 129981
chrM 16569 100.00% 331
chrX 156040895 100.00% 274340
chrY 57227415 100.00% 19921
GL000008.2 209709 394
GL000009.2 201709 655
GL000194.1 191469 841
GL000195.1 182896 801
GL000205.2 185591 1018
GL000208.1 92689 29
GL000213.1 164239 20
GL000214.1 137718 350
GL000216.2 176608 18
GL000218.1 161147 867
GL000219.1 179198 1015
GL000220.1 161802 800
GL000221.1 155397 811
GL000224.1 179693 349
GL000225.1 211173 29
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 13
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 1
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 10
KI270438.1 112505 5
KI270442.1 392061 158
KI270448.1 7992 9
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 5
KI270468.1 4055 1
KI270507.1 5353 3
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 8
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 11
KI270521.1 7642 1
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 5
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 3
KI270581.1 7046 3
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 7
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1231
KI270707.1 32032 95
KI270708.1 127682 55
KI270709.1 66860 13
KI270710.1 40176 5
KI270711.1 42210 380
KI270712.1 176043 123
KI270713.1 40745 96
KI270714.1 41717 27
KI270715.1 161471 1
KI270716.1 153799 1
KI270717.1 40062 3
KI270718.1 38054 511
KI270719.1 176845 457
KI270720.1 39050 62
KI270721.1 100316 67
KI270722.1 194050 81
KI270723.1 38115 11
KI270724.1 39555 5
KI270725.1 172810 35
KI270726.1 43739 13
KI270727.1 448248 295
KI270728.1 1872759 420
KI270729.1 280839 18
KI270730.1 112551 1
KI270731.1 150754 17
KI270732.1 41543 9
KI270733.1 179772 728
KI270734.1 165050 62
KI270735.1 42811 9
KI270736.1 181920 1
KI270737.1 103838 5
KI270738.1 99375 10
KI270739.1 73985 7
KI270740.1 37240 1
KI270741.1 157432 137
KI270742.1 186739 1021
KI270743.1 210658 322
KI270744.1 168472 382
KI270745.1 41891 218
KI270746.1 66486 59
KI270747.1 198735 6
KI270748.1 93321 68
KI270749.1 158759 70
KI270750.1 148850 25
KI270751.1 150742 303
KI270752.1 27745 1
KI270753.1 62944 12
KI270754.1 40191 1
KI270755.1 36723 9
KI270756.1 79590 1
KI270757.1 71251 3

Segment lengths

segments min max mean median
segments 8321692 2 30115150 372.49 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Microglia_age40-60.bw 45.35 MB f366fddaff22b14a65959f454c57ff60
genomic_resource.yaml 1.12 KB e008c75d61ffe1753ca78a7a19fd391b
statistics/