Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Microglia/age60-80/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Microglia cell type for age_range age60-80
Description
Labels
  • age_range: age60-80
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Microglia
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Microglia_age60-80 float

zemke2024Epigenetic_RNA_Microglia_age60-80

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Microglia_age60-80 [0, 3.55e+04]
n
3,099,750,718
mean
0.95
sd
23.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 9494436
chr1 248956422 100.00% 865305
chr2 242193529 100.00% 771790
chr3 198295559 100.00% 666250
chr4 190214555 100.00% 513733
chr5 181538259 100.00% 530699
chr6 170805979 100.00% 572493
chr7 159345973 100.00% 575696
chr8 145138636 100.00% 399016
chr9 138394717 100.00% 406803
chr10 133797422 100.00% 490148
chr11 135086622 100.00% 416630
chr12 133275309 100.00% 471529
chr13 114364328 100.00% 245784
chr14 107043718 100.00% 317998
chr15 101991189 100.00% 321874
chr16 90338345 100.00% 288513
chr17 83257441 100.00% 366571
chr18 80373285 100.00% 211801
chr19 58617616 100.00% 243434
chr20 64444167 100.00% 197407
chr21 46709983 100.00% 126484
chr22 50818468 100.00% 142429
chrM 16569 100.00% 332
chrX 156040895 100.00% 314544
chrY 57227415 100.00% 21105
GL000008.2 209709 436
GL000009.2 201709 663
GL000194.1 191469 897
GL000195.1 182896 914
GL000205.2 185591 1086
GL000208.1 92689 31
GL000213.1 164239 21
GL000214.1 137718 307
GL000216.2 176608 22
GL000218.1 161147 738
GL000219.1 179198 1057
GL000220.1 161802 771
GL000221.1 155397 711
GL000224.1 179693 271
GL000225.1 211173 13
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 13
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 3
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 19
KI270438.1 112505 9
KI270442.1 392061 184
KI270448.1 7992 2
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 8
KI270468.1 4055 1
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 7
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 11
KI270521.1 7642 1
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 6
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 3
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 3
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 11
KI270590.1 4685 1
KI270591.1 5796 6
KI270593.1 3041 1
KI270706.1 175055 1217
KI270707.1 32032 86
KI270708.1 127682 61
KI270709.1 66860 5
KI270710.1 40176 5
KI270711.1 42210 398
KI270712.1 176043 151
KI270713.1 40745 112
KI270714.1 41717 28
KI270715.1 161471 1
KI270716.1 153799 1
KI270717.1 40062 22
KI270718.1 38054 584
KI270719.1 176845 491
KI270720.1 39050 70
KI270721.1 100316 78
KI270722.1 194050 66
KI270723.1 38115 18
KI270724.1 39555 12
KI270725.1 172810 47
KI270726.1 43739 9
KI270727.1 448248 406
KI270728.1 1872759 399
KI270729.1 280839 13
KI270730.1 112551 1
KI270731.1 150754 30
KI270732.1 41543 11
KI270733.1 179772 784
KI270734.1 165050 69
KI270735.1 42811 20
KI270736.1 181920 21
KI270737.1 103838 5
KI270738.1 99375 5
KI270739.1 73985 7
KI270740.1 37240 1
KI270741.1 157432 145
KI270742.1 186739 890
KI270743.1 210658 301
KI270744.1 168472 430
KI270745.1 41891 252
KI270746.1 66486 71
KI270747.1 198735 13
KI270748.1 93321 63
KI270749.1 158759 48
KI270750.1 148850 21
KI270751.1 150742 269
KI270752.1 27745 1
KI270753.1 62944 3
KI270754.1 40191 1
KI270755.1 36723 9
KI270756.1 79590 1
KI270757.1 71251 3

Segment lengths

segments min max mean median
segments 9494436 2 30161250 326.48 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Microglia_age60-80.bw 51.67 MB aa26444086fb670aeb7a818b92c88d9a
genomic_resource.yaml 1.12 KB 58e3772204404781ca76f56721fe1546
statistics/