Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Microglia/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Microglia cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Microglia
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Microglia_all float

zemke2024Epigenetic_RNA_Microglia_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Microglia_all [0, 4.91e+04]
n
3,099,750,718
mean
0.945
sd
26.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 16287462
chr1 248956422 100.00% 1430787
chr2 242193529 100.00% 1315875
chr3 198295559 100.00% 1129724
chr4 190214555 100.00% 886974
chr5 181538259 100.00% 912889
chr6 170805979 100.00% 986818
chr7 159345973 100.00% 955675
chr8 145138636 100.00% 692603
chr9 138394717 100.00% 708533
chr10 133797422 100.00% 796265
chr11 135086622 100.00% 729660
chr12 133275309 100.00% 797501
chr13 114364328 100.00% 416009
chr14 107043718 100.00% 546387
chr15 101991189 100.00% 541327
chr16 90338345 100.00% 505192
chr17 83257441 100.00% 623276
chr18 80373285 100.00% 353870
chr19 58617616 100.00% 459383
chr20 64444167 100.00% 349017
chr21 46709983 100.00% 215644
chr22 50818468 100.00% 261157
chrM 16569 100.00% 331
chrX 156040895 100.00% 597189
chrY 57227415 100.00% 43659
GL000008.2 209709 1148
GL000009.2 201709 1333
GL000194.1 191469 1239
GL000195.1 182896 1386
GL000205.2 185591 1728
GL000208.1 92689 94
GL000213.1 164239 61
GL000214.1 137718 779
GL000216.2 176608 58
GL000218.1 161147 1157
GL000219.1 179198 1858
GL000220.1 161802 1214
GL000221.1 155397 1261
GL000224.1 179693 795
GL000225.1 211173 78
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 16
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 3
KI270362.1 3530 3
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 7
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 63
KI270438.1 112505 37
KI270442.1 392061 407
KI270448.1 7992 15
KI270465.1 1774 1
KI270466.1 1233 9
KI270467.1 3920 17
KI270468.1 4055 1
KI270507.1 5353 3
KI270508.1 1951 3
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 24
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 45
KI270521.1 7642 8
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 26
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 3
KI270580.1 1553 3
KI270581.1 7046 3
KI270582.1 6504 3
KI270583.1 1400 3
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 21
KI270590.1 4685 1
KI270591.1 5796 6
KI270593.1 3041 1
KI270706.1 175055 2287
KI270707.1 32032 197
KI270708.1 127682 187
KI270709.1 66860 25
KI270710.1 40176 17
KI270711.1 42210 611
KI270712.1 176043 403
KI270713.1 40745 249
KI270714.1 41717 82
KI270715.1 161471 1
KI270716.1 153799 3
KI270717.1 40062 72
KI270718.1 38054 678
KI270719.1 176845 1006
KI270720.1 39050 172
KI270721.1 100316 209
KI270722.1 194050 260
KI270723.1 38115 52
KI270724.1 39555 25
KI270725.1 172810 138
KI270726.1 43739 31
KI270727.1 448248 1295
KI270728.1 1872759 1270
KI270729.1 280839 58
KI270730.1 112551 5
KI270731.1 150754 80
KI270732.1 41543 32
KI270733.1 179772 1198
KI270734.1 165050 198
KI270735.1 42811 40
KI270736.1 181920 28
KI270737.1 103838 28
KI270738.1 99375 22
KI270739.1 73985 14
KI270740.1 37240 1
KI270741.1 157432 517
KI270742.1 186739 1679
KI270743.1 210658 734
KI270744.1 168472 888
KI270745.1 41891 440
KI270746.1 66486 136
KI270747.1 198735 31
KI270748.1 93321 250
KI270749.1 158759 203
KI270750.1 148850 99
KI270751.1 150742 641
KI270752.1 27745 3
KI270753.1 62944 24
KI270754.1 40191 3
KI270755.1 36723 87
KI270756.1 79590 1
KI270757.1 71251 7

Segment lengths

segments min max mean median
segments 16287462 2 30007500 190.32 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Microglia.bw 92.61 MB 4c96fd8c4990d0a9c85d058af8d31711
genomic_resource.yaml 1.1 KB c9b9dc942c15f8a93b1ccef4b17384d6
statistics/