Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/OPC/age20-40/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for OPC cell type for age_range age20-40
Description
Labels
  • age_range: age20-40
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: OPC
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_OPC_age20-40 float

zemke2024Epigenetic_RNA_OPC_age20-40

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_OPC_age20-40 [0, 3.68e+04]
n
3,099,750,718
mean
0.946
sd
18.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 17393594
chr1 248956422 100.00% 1453440
chr2 242193529 100.00% 1521985
chr3 198295559 100.00% 1326167
chr4 190214555 100.00% 977291
chr5 181538259 100.00% 1004296
chr6 170805979 100.00% 945032
chr7 159345973 100.00% 1041949
chr8 145138636 100.00% 817693
chr9 138394717 100.00% 727062
chr10 133797422 100.00% 836713
chr11 135086622 100.00% 875465
chr12 133275309 100.00% 825875
chr13 114364328 100.00% 508051
chr14 107043718 100.00% 612326
chr15 101991189 100.00% 553818
chr16 90338345 100.00% 484360
chr17 83257441 100.00% 540372
chr18 80373285 100.00% 411640
chr19 58617616 100.00% 387560
chr20 64444167 100.00% 368173
chr21 46709983 100.00% 199200
chr22 50818468 100.00% 219102
chrM 16569 100.00% 332
chrX 156040895 100.00% 676845
chrY 57227415 100.00% 49701
GL000008.2 209709 970
GL000009.2 201709 934
GL000194.1 191469 1036
GL000195.1 182896 1486
GL000205.2 185591 1026
GL000208.1 92689 70
GL000213.1 164239 164
GL000214.1 137718 585
GL000216.2 176608 53
GL000218.1 161147 818
GL000219.1 179198 1995
GL000220.1 161802 1002
GL000221.1 155397 1149
GL000224.1 179693 878
GL000225.1 211173 37
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 4
KI270305.1 1472 1
KI270310.1 1201 5
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 19
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 2
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 8
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 49
KI270438.1 112505 7
KI270442.1 392061 410
KI270448.1 7992 15
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 7
KI270468.1 4055 6
KI270507.1 5353 1
KI270508.1 1951 3
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 18
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 39
KI270521.1 7642 8
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 25
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 3
KI270581.1 7046 5
KI270582.1 6504 1
KI270583.1 1400 3
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 14
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1966
KI270707.1 32032 257
KI270708.1 127682 104
KI270709.1 66860 85
KI270710.1 40176 9
KI270711.1 42210 525
KI270712.1 176043 454
KI270713.1 40745 226
KI270714.1 41717 84
KI270715.1 161471 29
KI270716.1 153799 19
KI270717.1 40062 328
KI270718.1 38054 657
KI270719.1 176845 1086
KI270720.1 39050 144
KI270721.1 100316 107
KI270722.1 194050 158
KI270723.1 38115 15
KI270724.1 39555 7
KI270725.1 172810 299
KI270726.1 43739 23
KI270727.1 448248 1195
KI270728.1 1872759 1188
KI270729.1 280839 156
KI270730.1 112551 11
KI270731.1 150754 93
KI270732.1 41543 60
KI270733.1 179772 957
KI270734.1 165050 308
KI270735.1 42811 27
KI270736.1 181920 5
KI270737.1 103838 75
KI270738.1 99375 115
KI270739.1 73985 11
KI270740.1 37240 32
KI270741.1 157432 545
KI270742.1 186739 1515
KI270743.1 210658 604
KI270744.1 168472 934
KI270745.1 41891 151
KI270746.1 66486 134
KI270747.1 198735 159
KI270748.1 93321 267
KI270749.1 158759 260
KI270750.1 148850 77
KI270751.1 150742 422
KI270752.1 27745 3
KI270753.1 62944 66
KI270754.1 40191 5
KI270755.1 36723 242
KI270756.1 79590 1
KI270757.1 71251 11

Segment lengths

segments min max mean median
segments 17393594 2 30053050 178.21 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_OPC_age20-40.bw 97.46 MB 62cb28cd9931412dd5c2f8b9a62a94bd
genomic_resource.yaml 1.1 KB 98660026a99a3b4402ed5c3a6257afce
statistics/