Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/OPC/age40-60/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for OPC cell type for age_range age40-60
Description
Labels
  • age_range: age40-60
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: OPC
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_OPC_age40-60 float

zemke2024Epigenetic_RNA_OPC_age40-60

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_OPC_age40-60 [0, 3.96e+04]
n
3,099,750,718
mean
0.959
sd
19.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 14854033
chr1 248956422 100.00% 1244285
chr2 242193529 100.00% 1313032
chr3 198295559 100.00% 1129591
chr4 190214555 100.00% 832340
chr5 181538259 100.00% 853731
chr6 170805979 100.00% 805451
chr7 159345973 100.00% 890412
chr8 145138636 100.00% 699931
chr9 138394717 100.00% 623113
chr10 133797422 100.00% 725511
chr11 135086622 100.00% 747381
chr12 133275309 100.00% 710678
chr13 114364328 100.00% 424879
chr14 107043718 100.00% 521398
chr15 101991189 100.00% 474204
chr16 90338345 100.00% 413116
chr17 83257441 100.00% 476154
chr18 80373285 100.00% 341774
chr19 58617616 100.00% 349569
chr20 64444167 100.00% 303371
chr21 46709983 100.00% 181468
chr22 50818468 100.00% 185953
chrM 16569 100.00% 332
chrX 156040895 100.00% 544068
chrY 57227415 100.00% 37597
GL000008.2 209709 723
GL000009.2 201709 857
GL000194.1 191469 922
GL000195.1 182896 1363
GL000205.2 185591 994
GL000208.1 92689 67
GL000213.1 164239 97
GL000214.1 137718 507
GL000216.2 176608 29
GL000218.1 161147 1019
GL000219.1 179198 1870
GL000220.1 161802 977
GL000221.1 155397 1052
GL000224.1 179693 654
GL000225.1 211173 35
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 1
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 20
KI270333.1 2699 5
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 4
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 2
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 3
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 8
KI270381.1 1930 1
KI270382.1 4215 3
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 29
KI270438.1 112505 27
KI270442.1 392061 301
KI270448.1 7992 10
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 11
KI270468.1 4055 3
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 3
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 5
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 26
KI270521.1 7642 7
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 12
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 4
KI270580.1 1553 1
KI270581.1 7046 3
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 15
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1411
KI270707.1 32032 192
KI270708.1 127682 111
KI270709.1 66860 61
KI270710.1 40176 12
KI270711.1 42210 445
KI270712.1 176043 317
KI270713.1 40745 242
KI270714.1 41717 83
KI270715.1 161471 11
KI270716.1 153799 11
KI270717.1 40062 204
KI270718.1 38054 641
KI270719.1 176845 969
KI270720.1 39050 93
KI270721.1 100316 81
KI270722.1 194050 118
KI270723.1 38115 17
KI270724.1 39555 9
KI270725.1 172810 226
KI270726.1 43739 12
KI270727.1 448248 825
KI270728.1 1872759 841
KI270729.1 280839 109
KI270730.1 112551 5
KI270731.1 150754 112
KI270732.1 41543 63
KI270733.1 179772 987
KI270734.1 165050 335
KI270735.1 42811 29
KI270736.1 181920 9
KI270737.1 103838 49
KI270738.1 99375 80
KI270739.1 73985 9
KI270740.1 37240 11
KI270741.1 157432 344
KI270742.1 186739 1479
KI270743.1 210658 500
KI270744.1 168472 634
KI270745.1 41891 92
KI270746.1 66486 87
KI270747.1 198735 116
KI270748.1 93321 223
KI270749.1 158759 145
KI270750.1 148850 57
KI270751.1 150742 340
KI270752.1 27745 3
KI270753.1 62944 14
KI270754.1 40191 1
KI270755.1 36723 165
KI270756.1 79590 3
KI270757.1 71251 11

Segment lengths

segments min max mean median
segments 14854033 2 30102400 208.68 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_OPC_age40-60.bw 82.78 MB f44dbf1bfb1c6fe00a00dc45f9438bd1
genomic_resource.yaml 1.1 KB ca2f14c967e029a68b7eb409629b11e3
statistics/