Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/OPC/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for OPC cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: OPC
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_OPC_all float

zemke2024Epigenetic_RNA_OPC_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_OPC_all [0, 3.48e+04]
n
3,099,750,718
mean
0.947
sd
17.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 25052694
chr1 248956422 100.00% 2063389
chr2 242193529 100.00% 2150809
chr3 198295559 100.00% 1859802
chr4 190214555 100.00% 1426948
chr5 181538259 100.00% 1452001
chr6 170805979 100.00% 1377613
chr7 159345973 100.00% 1494933
chr8 145138636 100.00% 1168451
chr9 138394717 100.00% 1063735
chr10 133797422 100.00% 1177387
chr11 135086622 100.00% 1223295
chr12 133275309 100.00% 1192721
chr13 114364328 100.00% 719312
chr14 107043718 100.00% 859306
chr15 101991189 100.00% 799900
chr16 90338345 100.00% 722125
chr17 83257441 100.00% 785144
chr18 80373285 100.00% 594923
chr19 58617616 100.00% 590434
chr20 64444167 100.00% 544257
chr21 46709983 100.00% 296685
chr22 50818468 100.00% 329282
chrM 16569 100.00% 332
chrX 156040895 100.00% 1040088
chrY 57227415 100.00% 74172
GL000008.2 209709 1459
GL000009.2 201709 1494
GL000194.1 191469 1418
GL000195.1 182896 1774
GL000205.2 185591 1468
GL000208.1 92689 175
GL000213.1 164239 319
GL000214.1 137718 1023
GL000216.2 176608 138
GL000218.1 161147 1333
GL000219.1 179198 2577
GL000220.1 161802 1416
GL000221.1 155397 1453
GL000224.1 179693 1359
GL000225.1 211173 96
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 4
KI270305.1 1472 1
KI270310.1 1201 5
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 23
KI270333.1 2699 5
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 4
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 5
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 4
KI270378.1 1048 1
KI270379.1 1045 11
KI270381.1 1930 1
KI270382.1 4215 3
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 92
KI270438.1 112505 48
KI270442.1 392061 693
KI270448.1 7992 20
KI270465.1 1774 1
KI270466.1 1233 4
KI270467.1 3920 28
KI270468.1 4055 10
KI270507.1 5353 1
KI270508.1 1951 10
KI270509.1 2318 5
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 36
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 85
KI270521.1 7642 18
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 42
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 6
KI270580.1 1553 5
KI270581.1 7046 9
KI270582.1 6504 1
KI270583.1 1400 3
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 21
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 2659
KI270707.1 32032 417
KI270708.1 127682 258
KI270709.1 66860 173
KI270710.1 40176 30
KI270711.1 42210 692
KI270712.1 176043 811
KI270713.1 40745 396
KI270714.1 41717 173
KI270715.1 161471 79
KI270716.1 153799 65
KI270717.1 40062 476
KI270718.1 38054 717
KI270719.1 176845 1462
KI270720.1 39050 236
KI270721.1 100316 240
KI270722.1 194050 312
KI270723.1 38115 45
KI270724.1 39555 25
KI270725.1 172810 575
KI270726.1 43739 41
KI270727.1 448248 2343
KI270728.1 1872759 2469
KI270729.1 280839 322
KI270730.1 112551 19
KI270731.1 150754 249
KI270732.1 41543 134
KI270733.1 179772 1522
KI270734.1 165050 669
KI270735.1 42811 74
KI270736.1 181920 36
KI270737.1 103838 131
KI270738.1 99375 221
KI270739.1 73985 24
KI270740.1 37240 71
KI270741.1 157432 912
KI270742.1 186739 1981
KI270743.1 210658 1039
KI270744.1 168472 1401
KI270745.1 41891 311
KI270746.1 66486 244
KI270747.1 198735 299
KI270748.1 93321 513
KI270749.1 158759 458
KI270750.1 148850 216
KI270751.1 150742 775
KI270752.1 27745 7
KI270753.1 62944 123
KI270754.1 40191 7
KI270755.1 36723 393
KI270756.1 79590 7
KI270757.1 71251 18

Segment lengths

segments min max mean median
segments 25052694 2 30011850 123.73 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_OPC.bw 146.63 MB 0d1e2d61a0d356ea98c8249de04399df
genomic_resource.yaml 1.07 KB ddd01b8d0f4a1b96bff0f43ce85c7fb7
statistics/