Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/Oligo/all/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for Oligo cell type for age_range all
Description
Labels
  • age_range: all
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: Oligo
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_Oligo_all float

zemke2024Epigenetic_RNA_Oligo_all

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_Oligo_all [0, 6.77e+04]
n
3,099,750,718
mean
0.948
sd
33.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 26852507
chr1 248956422 100.00% 2261611
chr2 242193529 100.00% 2221658
chr3 198295559 100.00% 1890219
chr4 190214555 100.00% 1588718
chr5 181538259 100.00% 1603605
chr6 170805979 100.00% 1565449
chr7 159345973 100.00% 1558373
chr8 145138636 100.00% 1161599
chr9 138394717 100.00% 1198679
chr10 133797422 100.00% 1176343
chr11 135086622 100.00% 1222091
chr12 133275309 100.00% 1207400
chr13 114364328 100.00% 744491
chr14 107043718 100.00% 941418
chr15 101991189 100.00% 872693
chr16 90338345 100.00% 851189
chr17 83257441 100.00% 892150
chr18 80373285 100.00% 631362
chr19 58617616 100.00% 707270
chr20 64444167 100.00% 544650
chr21 46709983 100.00% 348693
chr22 50818468 100.00% 378750
chrM 16569 100.00% 332
chrX 156040895 100.00% 1134179
chrY 57227415 100.00% 89553
GL000008.2 209709 2078
GL000009.2 201709 1964
GL000194.1 191469 1888
GL000195.1 182896 1764
GL000205.2 185591 1825
GL000208.1 92689 218
GL000213.1 164239 164
GL000214.1 137718 1568
GL000216.2 176608 299
GL000218.1 161147 1792
GL000219.1 179198 3018
GL000220.1 161802 1708
GL000221.1 155397 1592
GL000224.1 179693 1883
GL000225.1 211173 371
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 3
KI270311.1 12399 3
KI270312.1 998 1
KI270315.1 2276 1
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 32
KI270333.1 2699 23
KI270334.1 1368 1
KI270335.1 1048 3
KI270336.1 1026 3
KI270337.1 1121 16
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 14
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 3
KI270373.1 1451 7
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 3
KI270378.1 1048 1
KI270379.1 1045 13
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 151
KI270438.1 112505 83
KI270442.1 392061 809
KI270448.1 7992 26
KI270465.1 1774 1
KI270466.1 1233 23
KI270467.1 3920 60
KI270468.1 4055 11
KI270507.1 5353 1
KI270508.1 1951 13
KI270509.1 2318 5
KI270510.1 2415 1
KI270511.1 8127 3
KI270512.1 22689 48
KI270515.1 6361 5
KI270516.1 1300 3
KI270517.1 3253 3
KI270518.1 2186 1
KI270519.1 138126 143
KI270521.1 7642 27
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 62
KI270539.1 993 1
KI270544.1 1202 3
KI270548.1 1599 1
KI270579.1 31033 13
KI270580.1 1553 7
KI270581.1 7046 17
KI270582.1 6504 9
KI270583.1 1400 4
KI270584.1 4513 3
KI270587.1 2969 1
KI270588.1 6158 3
KI270589.1 44474 34
KI270590.1 4685 1
KI270591.1 5796 3
KI270593.1 3041 3
KI270706.1 175055 3125
KI270707.1 32032 527
KI270708.1 127682 479
KI270709.1 66860 285
KI270710.1 40176 61
KI270711.1 42210 733
KI270712.1 176043 951
KI270713.1 40745 495
KI270714.1 41717 256
KI270715.1 161471 98
KI270716.1 153799 81
KI270717.1 40062 493
KI270718.1 38054 649
KI270719.1 176845 1547
KI270720.1 39050 330
KI270721.1 100316 539
KI270722.1 194050 618
KI270723.1 38115 100
KI270724.1 39555 81
KI270725.1 172810 857
KI270726.1 43739 50
KI270727.1 448248 1657
KI270728.1 1872759 4802
KI270729.1 280839 514
KI270730.1 112551 50
KI270731.1 150754 378
KI270732.1 41543 188
KI270733.1 179772 1855
KI270734.1 165050 786
KI270735.1 42811 132
KI270736.1 181920 71
KI270737.1 103838 168
KI270738.1 99375 308
KI270739.1 73985 50
KI270740.1 37240 101
KI270741.1 157432 1405
KI270742.1 186739 2182
KI270743.1 210658 1652
KI270744.1 168472 2012
KI270745.1 41891 459
KI270746.1 66486 451
KI270747.1 198735 385
KI270748.1 93321 847
KI270749.1 158759 747
KI270750.1 148850 413
KI270751.1 150742 1221
KI270752.1 27745 8
KI270753.1 62944 298
KI270754.1 40191 18
KI270755.1 36723 577
KI270756.1 79590 7
KI270757.1 71251 44

Segment lengths

segments min max mean median
segments 26852507 2 30009450 115.44 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_Oligo.bw 159.21 MB 64834622dd68ca55e0ad2c80fafcf4b9
genomic_resource.yaml 1.08 KB f71da2d8378c320511a4dc0664a20868
statistics/