Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/PVALB/age20-40/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for PVALB cell type for age_range age20-40
Description
Labels
  • age_range: age20-40
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: PVALB
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_PVALB_age20-40 float

zemke2024Epigenetic_RNA_PVALB_age20-40

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_PVALB_age20-40 [0, 6.82e+04]
n
3,099,750,718
mean
0.949
sd
33.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 10303075
chr1 248956422 100.00% 888850
chr2 242193529 100.00% 890237
chr3 198295559 100.00% 810409
chr4 190214555 100.00% 586326
chr5 181538259 100.00% 621460
chr6 170805979 100.00% 573717
chr7 159345973 100.00% 645592
chr8 145138636 100.00% 491966
chr9 138394717 100.00% 426866
chr10 133797422 100.00% 478695
chr11 135086622 100.00% 492347
chr12 133275309 100.00% 540379
chr13 114364328 100.00% 326706
chr14 107043718 100.00% 328980
chr15 101991189 100.00% 332752
chr16 90338345 100.00% 289475
chr17 83257441 100.00% 321131
chr18 80373285 100.00% 229469
chr19 58617616 100.00% 221444
chr20 64444167 100.00% 185420
chr21 46709983 100.00% 107114
chr22 50818468 100.00% 126848
chrM 16569 100.00% 332
chrX 156040895 100.00% 360848
chrY 57227415 100.00% 11994
GL000008.2 209709 278
GL000009.2 201709 373
GL000194.1 191469 483
GL000195.1 182896 573
GL000205.2 185591 146
GL000208.1 92689 21
GL000213.1 164239 82
GL000214.1 137718 259
GL000216.2 176608 16
GL000218.1 161147 327
GL000219.1 179198 1059
GL000220.1 161802 512
GL000221.1 155397 575
GL000224.1 179693 198
GL000225.1 211173 36
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 5
KI270305.1 1472 1
KI270310.1 1201 5
KI270311.1 12399 3
KI270312.1 998 1
KI270315.1 2276 2
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 1
KI270329.1 1040 1
KI270330.1 1652 14
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 1
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 3
KI270373.1 1451 3
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 1
KI270381.1 1930 1
KI270382.1 4215 3
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 24
KI270438.1 112505 3
KI270442.1 392061 146
KI270448.1 7992 8
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 1
KI270468.1 4055 3
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 1
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 5
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 17
KI270521.1 7642 5
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 5
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 1
KI270581.1 7046 3
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 14
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1096
KI270707.1 32032 194
KI270708.1 127682 50
KI270709.1 66860 35
KI270710.1 40176 5
KI270711.1 42210 305
KI270712.1 176043 399
KI270713.1 40745 152
KI270714.1 41717 23
KI270715.1 161471 7
KI270716.1 153799 9
KI270717.1 40062 149
KI270718.1 38054 564
KI270719.1 176845 740
KI270720.1 39050 45
KI270721.1 100316 62
KI270722.1 194050 41
KI270723.1 38115 13
KI270724.1 39555 7
KI270725.1 172810 110
KI270726.1 43739 5
KI270727.1 448248 1043
KI270728.1 1872759 417
KI270729.1 280839 43
KI270730.1 112551 1
KI270731.1 150754 46
KI270732.1 41543 18
KI270733.1 179772 520
KI270734.1 165050 121
KI270735.1 42811 11
KI270736.1 181920 1
KI270737.1 103838 13
KI270738.1 99375 30
KI270739.1 73985 5
KI270740.1 37240 1
KI270741.1 157432 128
KI270742.1 186739 729
KI270743.1 210658 231
KI270744.1 168472 471
KI270745.1 41891 81
KI270746.1 66486 71
KI270747.1 198735 32
KI270748.1 93321 107
KI270749.1 158759 60
KI270750.1 148850 29
KI270751.1 150742 172
KI270752.1 27745 1
KI270753.1 62944 7
KI270754.1 40191 1
KI270755.1 36723 15
KI270756.1 79590 1
KI270757.1 71251 9

Segment lengths

segments min max mean median
segments 10303075 2 30205850 300.86 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_PVALB_age20-40.bw 55.45 MB 78b64d6b85bd06e37fc745a557b399c7
genomic_resource.yaml 1.11 KB b7b055ff7cb4c6c3e8373ac2dc076d81
statistics/