Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/PVALB/age80-100/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for PVALB cell type for age_range age80-100
Description
Labels
  • age_range: age80-100
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: PVALB
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_PVALB_age80-100 float

zemke2024Epigenetic_RNA_PVALB_age80-100

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_PVALB_age80-100 [0, 6.41e+04]
n
3,099,750,718
mean
0.939
sd
27.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 16034670
chr1 248956422 100.00% 1367320
chr2 242193529 100.00% 1359662
chr3 198295559 100.00% 1240170
chr4 190214555 100.00% 904207
chr5 181538259 100.00% 975499
chr6 170805979 100.00% 905880
chr7 159345973 100.00% 991093
chr8 145138636 100.00% 762254
chr9 138394717 100.00% 679063
chr10 133797422 100.00% 745910
chr11 135086622 100.00% 754324
chr12 133275309 100.00% 822370
chr13 114364328 100.00% 480027
chr14 107043718 100.00% 509257
chr15 101991189 100.00% 519307
chr16 90338345 100.00% 452642
chr17 83257441 100.00% 508214
chr18 80373285 100.00% 363558
chr19 58617616 100.00% 348041
chr20 64444167 100.00% 308524
chr21 46709983 100.00% 172170
chr22 50818468 100.00% 205731
chrM 16569 100.00% 332
chrX 156040895 100.00% 596495
chrY 57227415 100.00% 41278
GL000008.2 209709 412
GL000009.2 201709 615
GL000194.1 191469 912
GL000195.1 182896 404
GL000205.2 185591 176
GL000208.1 92689 62
GL000213.1 164239 136
GL000214.1 137718 299
GL000216.2 176608 59
GL000218.1 161147 768
GL000219.1 179198 1673
GL000220.1 161802 626
GL000221.1 155397 858
GL000224.1 179693 720
GL000225.1 211173 45
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 1
KI270304.1 2165 1
KI270305.1 1472 1
KI270310.1 1201 3
KI270311.1 12399 1
KI270312.1 998 1
KI270315.1 2276 3
KI270316.1 1444 1
KI270317.1 37690 1
KI270320.1 4416 1
KI270322.1 21476 3
KI270329.1 1040 1
KI270330.1 1652 20
KI270333.1 2699 9
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 2
KI270337.1 1121 14
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 3
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 1
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 3
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 1
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 3
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 3
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 32
KI270438.1 112505 16
KI270442.1 392061 237
KI270448.1 7992 9
KI270465.1 1774 1
KI270466.1 1233 15
KI270467.1 3920 43
KI270468.1 4055 11
KI270507.1 5353 1
KI270508.1 1951 1
KI270509.1 2318 3
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 18
KI270515.1 6361 1
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 28
KI270521.1 7642 3
KI270522.1 5674 3
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 21
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 3
KI270579.1 31033 3
KI270580.1 1553 1
KI270581.1 7046 3
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 5
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1205
KI270707.1 32032 211
KI270708.1 127682 46
KI270709.1 66860 41
KI270710.1 40176 11
KI270711.1 42210 464
KI270712.1 176043 721
KI270713.1 40745 167
KI270714.1 41717 83
KI270715.1 161471 63
KI270716.1 153799 63
KI270717.1 40062 206
KI270718.1 38054 636
KI270719.1 176845 994
KI270720.1 39050 86
KI270721.1 100316 127
KI270722.1 194050 110
KI270723.1 38115 24
KI270724.1 39555 13
KI270725.1 172810 166
KI270726.1 43739 13
KI270727.1 448248 1922
KI270728.1 1872759 742
KI270729.1 280839 106
KI270730.1 112551 1
KI270731.1 150754 65
KI270732.1 41543 41
KI270733.1 179772 590
KI270734.1 165050 239
KI270735.1 42811 29
KI270736.1 181920 22
KI270737.1 103838 41
KI270738.1 99375 81
KI270739.1 73985 15
KI270740.1 37240 23
KI270741.1 157432 434
KI270742.1 186739 1294
KI270743.1 210658 387
KI270744.1 168472 500
KI270745.1 41891 164
KI270746.1 66486 96
KI270747.1 198735 92
KI270748.1 93321 181
KI270749.1 158759 127
KI270750.1 148850 48
KI270751.1 150742 181
KI270752.1 27745 5
KI270753.1 62944 32
KI270754.1 40191 1
KI270755.1 36723 71
KI270756.1 79590 1
KI270757.1 71251 3

Segment lengths

segments min max mean median
segments 16034670 2 30108800 193.32 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_PVALB_age80-100.bw 87.8 MB 8667711c66c4bd88dbc2ab4c08868fc4
genomic_resource.yaml 1.11 KB eb13c1bf9d87c5a0259aaee0168e5aec
statistics/