Resource

Id summary/zemke2024Epigenetic/pseudobulk_rna/SST/age80-100/bigwigcontent_copy
Type position_score
Version 0
Summary RNA for SST cell type for age_range age80-100
Description
Labels
  • age_range: age80-100
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • cell_type: SST
  • data_types: expression_signal
  • dataset: zemke2024Epigenetic
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: pseudo_bulk_cell_type
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (1)

ID Type Default annotation Description Histogram Range Summary
zemke2024Epigenetic_RNA_SST_age80-100 float

zemke2024Epigenetic_RNA_SST_age80-100

RPKM?
HISTOGRAM FOR zemke2024Epigenetic_RNA_SST_age80-100 [0, 4.52e+04]
n
3,099,750,718
mean
0.924
sd
26.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 3099750718 14435550
chr1 248956422 100.00% 1225409
chr2 242193529 100.00% 1209687
chr3 198295559 100.00% 1121000
chr4 190214555 100.00% 827676
chr5 181538259 100.00% 861354
chr6 170805979 100.00% 839202
chr7 159345973 100.00% 873671
chr8 145138636 100.00% 671724
chr9 138394717 100.00% 636615
chr10 133797422 100.00% 665994
chr11 135086622 100.00% 658301
chr12 133275309 100.00% 733929
chr13 114364328 100.00% 409903
chr14 107043718 100.00% 471032
chr15 101991189 100.00% 463035
chr16 90338345 100.00% 409718
chr17 83257441 100.00% 459441
chr18 80373285 100.00% 326364
chr19 58617616 100.00% 322954
chr20 64444167 100.00% 293265
chr21 46709983 100.00% 159436
chr22 50818468 100.00% 184253
chrM 16569 100.00% 331
chrX 156040895 100.00% 550619
chrY 57227415 100.00% 40386
GL000008.2 209709 327
GL000009.2 201709 605
GL000194.1 191469 895
GL000195.1 182896 393
GL000205.2 185591 280
GL000208.1 92689 66
GL000213.1 164239 58
GL000214.1 137718 304
GL000216.2 176608 33
GL000218.1 161147 712
GL000219.1 179198 1652
GL000220.1 161802 630
GL000221.1 155397 859
GL000224.1 179693 717
GL000225.1 211173 40
GL000226.1 15008 1
KI270302.1 2274 1
KI270303.1 1942 5
KI270304.1 2165 3
KI270305.1 1472 1
KI270310.1 1201 9
KI270311.1 12399 16
KI270312.1 998 1
KI270315.1 2276 5
KI270316.1 1444 1
KI270317.1 37690 3
KI270320.1 4416 4
KI270322.1 21476 5
KI270329.1 1040 1
KI270330.1 1652 15
KI270333.1 2699 1
KI270334.1 1368 1
KI270335.1 1048 1
KI270336.1 1026 1
KI270337.1 1121 1
KI270338.1 1428 1
KI270340.1 1428 1
KI270362.1 3530 1
KI270363.1 1803 5
KI270364.1 2855 1
KI270366.1 8320 1
KI270371.1 2805 1
KI270372.1 1650 1
KI270373.1 1451 3
KI270374.1 2656 1
KI270375.1 2378 1
KI270376.1 1136 1
KI270378.1 1048 1
KI270379.1 1045 5
KI270381.1 1930 1
KI270382.1 4215 1
KI270383.1 1750 1
KI270384.1 1658 1
KI270385.1 990 1
KI270386.1 1788 1
KI270387.1 1537 1
KI270388.1 1216 3
KI270389.1 1298 1
KI270390.1 2387 1
KI270391.1 1484 1
KI270392.1 971 1
KI270393.1 1308 1
KI270394.1 970 1
KI270395.1 1143 1
KI270396.1 1880 1
KI270411.1 2646 1
KI270412.1 1179 1
KI270414.1 2489 1
KI270417.1 2043 1
KI270418.1 2145 1
KI270419.1 1029 1
KI270420.1 2321 1
KI270422.1 1445 1
KI270423.1 981 1
KI270424.1 2140 1
KI270425.1 1884 1
KI270429.1 1361 1
KI270435.1 92983 30
KI270438.1 112505 11
KI270442.1 392061 216
KI270448.1 7992 15
KI270465.1 1774 1
KI270466.1 1233 1
KI270467.1 3920 3
KI270468.1 4055 4
KI270507.1 5353 1
KI270508.1 1951 8
KI270509.1 2318 3
KI270510.1 2415 1
KI270511.1 8127 1
KI270512.1 22689 9
KI270515.1 6361 3
KI270516.1 1300 1
KI270517.1 3253 1
KI270518.1 2186 1
KI270519.1 138126 19
KI270521.1 7642 11
KI270522.1 5674 1
KI270528.1 2983 1
KI270529.1 1899 1
KI270530.1 2168 1
KI270538.1 91309 9
KI270539.1 993 1
KI270544.1 1202 1
KI270548.1 1599 1
KI270579.1 31033 1
KI270580.1 1553 1
KI270581.1 7046 1
KI270582.1 6504 1
KI270583.1 1400 1
KI270584.1 4513 1
KI270587.1 2969 1
KI270588.1 6158 1
KI270589.1 44474 9
KI270590.1 4685 1
KI270591.1 5796 1
KI270593.1 3041 1
KI270706.1 175055 1027
KI270707.1 32032 180
KI270708.1 127682 78
KI270709.1 66860 46
KI270710.1 40176 5
KI270711.1 42210 446
KI270712.1 176043 666
KI270713.1 40745 191
KI270714.1 41717 95
KI270715.1 161471 402
KI270716.1 153799 526
KI270717.1 40062 207
KI270718.1 38054 605
KI270719.1 176845 850
KI270720.1 39050 65
KI270721.1 100316 119
KI270722.1 194050 72
KI270723.1 38115 12
KI270724.1 39555 15
KI270725.1 172810 184
KI270726.1 43739 9
KI270727.1 448248 934
KI270728.1 1872759 750
KI270729.1 280839 101
KI270730.1 112551 5
KI270731.1 150754 83
KI270732.1 41543 60
KI270733.1 179772 578
KI270734.1 165050 196
KI270735.1 42811 29
KI270736.1 181920 7
KI270737.1 103838 50
KI270738.1 99375 72
KI270739.1 73985 5
KI270740.1 37240 7
KI270741.1 157432 452
KI270742.1 186739 1234
KI270743.1 210658 297
KI270744.1 168472 498
KI270745.1 41891 150
KI270746.1 66486 204
KI270747.1 198735 132
KI270748.1 93321 104
KI270749.1 158759 104
KI270750.1 148850 35
KI270751.1 150742 190
KI270752.1 27745 3
KI270753.1 62944 15
KI270754.1 40191 5
KI270755.1 36723 72
KI270756.1 79590 1
KI270757.1 71251 1

Segment lengths

segments min max mean median
segments 14435550 2 30188950 214.73 50
global segment-length histogram

Files

Filename Size md5
GSE278576_RNA_SST_age80-100.bw 78.2 MB 72fc010583cfbd50185fd61b0add8719
genomic_resource.yaml 1.1 KB 189cdb69cea40a94ba42cd4fdfead0ad
statistics/